Sequence
atgc intronic sequence ATGC exonic sequence...tacttttcccttgtcaaaatcccttttagtatgtataacttttggtactagccttttcttcctttctgtgacacttacttgtgatctgctgtggccacagGTTACCTCAAAGAAGGATCAAGAGCAGTACTGGGCAGATTCCACCGAGCCCTACCGATACGTATCAGTCACCGAATTCGCCACCCTGTTCAAGGCCTTCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g03580.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA07G01860.1 (Glycine max), 3'ss of exon 9
----tacttttcccttgt----caaaatcccttttagtatgtataacttttggtactagccttttcttcctttctgtgacacttacttgtgatctgctgtggccacagGTTACCTCAAAGAAGGATCAAGAGCAGTACTGGGCAGATTCCACCGAGCCCTACCGATACGTATCAGTCACCGAATTCGCCACCCTGTTCAAGGCCTTCC
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ctcatactgtaactttttggaataagttggtcttaattatatataaaagaaaggagtaaggggaattagaatt--acaatgct-acttggaa---attttga--acagGTTACCTCAAGGAAGGATCAGGAGCAATACTGGGCAGACAAAAACATGCCATACCGTTATGTTACAGTGACAGAATTTGCAAACAAGTTCAAGAGATTCC
upper sequence: Vv09s0002g03580.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G21540.2 (Glycine max), 3'ss of exon 8
---------tacttttcccttgtcaaaatcccttttagtatgtataacttttggtactagccttttcttcctttctgtgacacttacttgtgatctgctgtggccacagGTTACCTCAAAGAAGGATCAAGAGCAGTACTGGGCAGATTCCACCGAGCCCTACCGATACGTATCAGTCACCGAATTCGCCACCCTGTTCAAGGCCTTCC
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aaaacatgcaggctctctctgatgatgatgttatttaaaaaaaaaaaaaaaaagagtaagggcaattagaattacaatgttactt-----tgaaatattga----acagGTTACCTCAAGGAAGGACCAAGAGCAGTATTGGGCAGACAAAAACATGCCATACCGTTATGTTACAGTGACTGAATTTGCAAACAAGTTCAAGAGATTCC
upper sequence: Vv09s0002g03580.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G15210.1 (Arabidopsis thaliana), 3'ss of exon 3
tacttttcccttgtcaaaatcccttttagtatgtataactt---ttggtactagccttttcttcctttctgtgacacttacttgtgatctgc-tgtggccacagGTTACCTCAAAGAAGGATCAAGAGCAGTACTGGGCAGATTCCACCGAGCCCTACCGATACGTATCAGTCACCGAATTCGCCACCCTGTTCAAGGCCTTCC
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------------gtaaatatatatattagaccgttagacctaacttggtattaatatttga--cccgaaagtgacttacaaattacatttacgtgtgga-acagGTTACCTCAAAGAAAGATCAAGAACAGTATTGGGTTGATCCAAACAGACCCTATAGATACATTCCAGTGTCGGAGTTTGCCAGCAGCTTTAAGAAATTCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tactagccttttcttcctttctgtgacacttacttgtgatctgctgtggccacagGTTACCTCAAAGAAGGATCAAGAGCAGTACTGGGCAGATTCCACCGAGCCCTACCGATACGTATCAGTCACCGAATTCGCCACCCTGTTCAAGGCCTTCC
cacttac putative branch site (score: 2)
ttttctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tacttttcccttgtcaaaatcccttttagtatgtataacttttggtactagccttttcttcctttctgtgacacttacttgtgatctgctgtggccacagGTTACCTCAAAGAAGGATCAAGAGCAGTACTGGGCAGATTCCACCGAGCCCTACCGATACGTATCAGTCACCGAATTCGCCACCCTGTTCAAGGCCTTCC
- - - -cccttgt
- - - - - - - -aaaatcc
- - - - - - - - - - - - - - - - - - - cttttgg