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gttagccctactcagtttaatggtcgttctagtgacagttccaattgtttgtcagcaacttctagttcaaagcagtttagatatcaataatatgaaaagaatcacatctttgattggttcagttcttcatttgcagGCTCTTGAGAAGTGTCAGCTTAAGGCAACAATCAGCAGCCTCCCAAACTTACTAGACTCATATG
species | Vitis vinifera |
transcript | Vv09s0002g02440.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACGATGAAATATGGGAG GCTCTTGAGAAGTGTCAGCTTAAGGCAACAATCAGCAGCCTCCCAAACTTAEST: gi|110694968|gb|EE072449.1|EE072449
genomic: GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACGATGAAATATGGGAGgttagcccta ... tcatttgcagGCTCTTGAGAAGTGTCAGCTTAAGGCAACAATCAGCAGCCTCCCAAACTTA
EST: AACTAACTTGGACCCTCTTAG-CCTTTACTCTGACGATGAAATATGGGAA GCTCTTGAGAAEST: gi|110362756|gb|EC926308.1|EC926308
genomic: AACTAACTTGGACCCTCT-AGGCCTTTACTCTGACGATGAAATATGGGAGgttagcccta ... tcatttgcagGCTCTTGAGAA
EST: GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACGATGAAATATGGGAG GCTCTTGAGAAGTGTCAGCTTAAGGCAACAATCAGCAGCCTCCCAAACTTAEST: gi|110381535|gb|EC934720.1|EC934720
genomic: GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACGATGAAATATGGGAGgttagcccta ... tcatttgcagGCTCTTGAGAAGTGTCAGCTTAAGGCAACAATCAGCAGCCTCCCAAACTTA
EST: GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACGATGAAATATGGGAG GCTCTTGAGAAGTGTCAGCTTAAGGCAACAATCAGCAGCCTCCCAAACTTAEST: gi|37190464|gb|CF609813.1|CF609813
genomic: GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACGATGAAATATGGGAGgttagcccta ... tcatttgcagGCTCTTGAGAAGTGTCAGCTTAAGGCAACAATCAGCAGCCTCCCAAACTTA
EST: GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACGATGAAATATGGGAG GCTCTTGAGAAGTGTCAGCTTAAGGCAACAATCAGGAGCCTCCCAAACTTA
genomic: GAACTAACTTGGACCCTCTAGGCCTTTACTCTGACGATGAAATATGGGAGgttagcccta ... tcatttgcagGCTCTTGAGAAGTGTCAGCTTAAGGCAACAATCAGCAGCCTCCCAAACTTA
tatcaataatatgaaaagaatcacatctttgattggttcagttcttcatttgcagGCTCTTGAGAAGTGTCAGCTTAAGGCAACAATCAGCAGCCTCCCAAACTTACTAGACTCATATG
ctttgat putative branch site (score: 5)
ttcttcattt putative PPT
ataatatgaaaagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagccctactcagtttaatggtcgttctagtgacagttccaattgtttgtcagcaacttctagttcaaagcagtttagatatcaataatatgaaaagaatcacatctttgattggttcagttcttcatttgcagGCTCTTGAGAAGTGTCAGCTTAAGGCAACAATCAGCAGCCTCCCAAACTTACTAGACTCATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT