Sequence
atgc intronic sequence ATGC exonic sequence...tgacatggctaaattcttgaaaggaagtgagagcatgtccacccaggatgacttcaaaagctgcatttcaatcttcttacatgttaggttttggttgcagATGTCAAGGATGTGAAATTTGTGATCAACTATGACTTCCCGGGATCTCTTGAAGATTATGTCCACCGCATTGGTCGAACAGGAAGGGCTGGGGCCAAAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g02100.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os01g10050.1 (Oryza sativa), 3'ss of exon 8
tgacatggctaaattcttgaaaggaagtgagagcatgtccacccaggatgacttcaaaagctgcatttcaatcttcttacat-gttaggttttggttgcagATGTCAAGGATGTGAAATTTGTGATCAACTATGACTTCCCGGGATCTCTTGAAGATTATGTCCACCGCATTGGTCGAACAGGAAGGGCTGGGGCCAAAGG
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--------------------------gtatacaaaaatcctcccagatcga-tgaattatatttatttctgtaaactaatgccacttatatctggaaacagATGTTAAGGATGTTAAATATGTCATTAACTATGACTTTCCGGGATCATTGGAGGATTATGTTCATCGCATTGGTCGAACTGGCAGAGCTGGAGCAAAAGG
upper sequence: Vv09s0002g02100.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G143246_T01 (Zea mays), 3'ss of exon 8
tgacatggctaaattcttgaaaggaagtgagagcatgtccacccaggatgacttcaaaagctgcatttcaatcttcttacatgttaggttttggttgcagATGTCAAGGATGTGAAATTTGTGATCAACTATGACTTCCCGGGATCTCTTGAAGATTATGTCCACCGCATTGGTCGAACAGGAAGGGCTGGGGCCAAAGG
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--gtatgcccaacttt-----gagatgtgata-------catcttatatttcctgaggaaattgatacacgtttctttcc--------cttggaaaacagATGTCAAGGATGTGAAGTATGTCATTAACTATGACTTTCCGGGGTCACTCGAGGATTATGTTCATCGTATAGGTCGAACTGGCAGAGCAGGTGCAAAAGG
upper sequence: Vv09s0002g02100.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA07G01260.1 (Glycine max), 3'ss of exon 8
-tgacatggctaaattcttgaaaggaagtgagagcatgtccacccag--gatgacttcaaaagc-tgcatttcaatcttcttacatgttaggttttggttgcagATGTCAAGGATGTGAAATTTGTGATCAACTATGACTTCCCGGGATCTCTTGAAGATTATGTCCACCGCATTGGTCGAACAGGAAGGGCTGGGGCCAAAGG
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gtgatttgat--gactttcagtttactttgtcactttttaaagttaaccaatagctttgcttatgtatatcttaatcctttctactatttgattacggt--cagATGTGAAGGATGTGAAATATGTAATAAATTATGACTTCCCGGGGTCACTTGAGGATTATGTTCATCGCATTGGGCGGACAGGGAGAGCTGGTGCAAAAGG
upper sequence: Vv09s0002g02100.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G20670.1 (Glycine max), 3'ss of exon 8
tgacatggctaaatt-cttgaaaggaagtgagagcatgtccacccag--gatgacttcaaaagc-tgcatttcaatcttcttacatgttaggttttggttgcagATGTCAAGGATGTGAAATTTGTGATCAACTATGACTTCCCGGGATCTCTTGAAGATTATGTCCACCGCATTGGTCGAACAGGAAGGGCTGGGGCCAAAGG
|| | || ||| | | || || | | | | || ||| | || | |||| | | | || | || || ||||||| |||||||| |||| ||| | || |||||||||||||| || ||||| |||||||| || |||||||| || ||||| |||||||| || |||||
--ttgtgatttgatgactttcagtttattgtcagtttttaaagttaatcaatagctttgctcatgtatatcttaatcctttctactatttgattactgt--cagATGTGAAGGATGTAAAATATGTTGTAAATTATGACTTCCCGGGGTCACTTGAGGATTATGTTCATCGCATTGGGCGGACAGGGAGGGCTGGTGCAAAAGG
upper sequence: Vv09s0002g02100.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA07G11880.1 (Glycine max), 3'ss of exon 9
-tgacatggctaaattcttgaaaggaagtgagagcat--gtccacccaggatgacttcaaaagctgcatttcaatcttcttacatgttaggttttggttgcagATGTCAAGGATGTGAAATTTGTGATCAACTATGACTTCCCGGGATCTCTTGAAGATTATGTCCACCGCATTGGTCGAACAGGAAGGGCTGGGGCCAAAGG
||| || | ||| | || | | | | ||| | | | | | |||| ||| ||| | || | || || ||||||| ||||||||||||| ||| || || |||||||||| ||| || ||||| |||||||| || |||||||| || | ||| || ||||| || |||||
gtgatttgatgactttcagtttactttgtcactttttaaggttaaccaatagctttgcttatgtatatcttcatcctttctac-tatttgattactgt--cagATGTGAAGGATGTGAAATATGTAATAAATTATGACTTCCGGGGGTCACTTGAGGATTATGTTCATCGCATTGGGCGGATAGGGAGAGCTGGCGCAAAAGG
upper sequence: Vv09s0002g02100.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G55150.1 (Arabidopsis thaliana), 3'ss of exon 8
tgacatggctaaattcttgaaaggaagtgagagcatgtccacccaggatgacttcaaaagctgcatttcaatcttcttacatgttaggttttggttgcagATGTCAAGGATGTGAAATTTGTGATCAACTATGACTTCCCGGGATCTCTTGAAGATTATGTCCACCGCATTGGTCGAACAGGAAGGGCTGGGGCCAAAGG
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----gtactaaatctttttctcatctgcgtgcaaacatcaactctct-taaccatggtgacaagctaacaacagttct-----ttttgttttga--acagACGTGAAAGATGTGAAGTATGTGATAAACTATGACTTCCCTGGATCACTGGAGGATTATGTTCACAGGATTGGACGAACAGGTAGAGCCGGGGCTAAAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggatgacttcaaaagctgcatttcaatcttcttacatgttaggttttggttgcagATGTCAAGGATGTGAAATTTGTGATCAACTATGACTTCCCGGGATCTCTTGAAGATTATGTCCACCGCATTGGTCGAACAGGAAGGGCTGGGGCCAAAGG
ttcttac putative branch site (score: 2)
atttcaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgacatggctaaattcttgaaaggaagtgagagcatgtccacccaggatgacttcaaaagctgcatttcaatcttcttacatgttaggttttggttgcagATGTCAAGGATGTGAAATTTGTGATCAACTATGACTTCCCGGGATCTCTTGAAGATTATGTCCACCGCATTGGTCGAACAGGAAGGGCTGGGGCCAAAGG
- acatggc
- - - - - - - - - -aaaggaa
- - - - - - - - - - - - - - - gagcatg
- - - - - - - - - - - - - - - - - - - ccaccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - caaaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatttc