Sequence
atgc intronic sequence ATGC exonic sequence...cagaattatttcccatctgttcctctgttacaatcttgatgtcacggccatcctcccactgtctgcctcaccttctcactggctgtttttacatccgcagATTTGGGAAGATGGTTGCTTGCTTTCGCTATGCATCGATTGATGTTCATTCAGTCTACCTTCCCCCCGCAAAACTTGAATTCAACTATGAGAATCAAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g00380.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA16G01590.1 (Glycine max), 3'ss of exon 8
cagaattatttcccatctgttcctctgttaca-atcttgatgtcacggccatcctcccactgtctgcctcaccttctcact---ggctgtttttacatccgcagATTTGGGAAGATGGTTGCTTGCTTTCGCTATGCATCGATTGATGTTCATTCAGTCTACCTTCCCCCCGCAAAACTTGAATTCAACTATGAGAATCAAGAG
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----tttgttgtgtatatgtttgtggctaatatgtgtacatgtagcagttttttttgtagcattcattaattcttcatactcatgagagctgtctctcttgcagATTTGGAAGAATGGTTGCTTGTTTTCGATATGCATCAATTGATGTTCACTCAGTCTACCTTCCCCCCCACACACTTATATTTGATTATGGGAATCAGGAC
upper sequence: Vv09s0002g00380.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA07G05100.1 (Glycine max), 3'ss of exon 7
-----cagaattatttcccatctgttcctctgttacaatcttgatgtcacggccatcctcccactgtctgcctcaccttctcactggctgtttttacatccgcagATTTGGGAAGATGGTTGCTTGCTTTCGCTATGCATCGATTGATGTTCATTCAGTCTACCTTCCCCCCGCAAAACTTGAATTCAACTATGAGAATCAAGAG
| | | || ||| ||| || | || | | | | | | | | | ||| | |||| || || | || | |||||||||| | ||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||| | |||| ||| | |||| |||||| ||
ttttttgtgtgtgtggctaatatgtgtacatgtatcagttttttttgtgtgtgtggcattc-attaatt-cttca--tactca-tgagtgatgttcctcttgcagATTTGGAAGAATGGTTGCTTGTTTTCGATATGCATCAATTGATGTTCACTCAGTCTACCTTCCCCCCCACACACTTATATTTGATTATGGGAATCAGGAT
upper sequence: Vv09s0002g00380.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G14270.1 (Arabidopsis thaliana), 3'ss of exon 7
-cagaattatttcccatctgttcctctgtta--caatcttgatgtcacggccatcctcccactgtctgcc--tcaccttctcactggctgtttttacatccgcagATTTGGGAAGATGGTTGCTTGCTTTCGCTATGCATCGATTGATGTTCATTCAGTCTACCTTCCCCCCGCAAAACTTGAATTCAACTATGAGAATCAAGAG
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gtacttttttcttgcgtccactcctccttgggccaaatatgattaattgttaaaaattgtcttgtttaaaagtctgttttttcctaacaagttgtgcccgtgcagATTTGGGAACATGGTTGCTTGCTTCCGGTACGCTACTATAGATGTTCATTCGGTCTACCTTCCACCATCAATTCTTAGTTTCAACTACGAGAATCAGGAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggccatcctcccactgtctgcctcaccttctcactggctgtttttacatccgcagATTTGGGAAGATGGTTGCTTGCTTTCGCTATGCATCGATTGATGTTCATTCAGTCTACCTTCCCCCCGCAAAACTTGAATTCAACTATGAGAATCAAGAG
ttctcac putative branch site (score: 2)
tttttac putative PPT
tttttacat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cagaattatttcccatctgttcctctgttacaatcttgatgtcacggccatcctcccactgtctgcctcaccttctcactggctgtttttacatccgcagATTTGGGAAGATGGTTGCTTGCTTTCGCTATGCATCGATTGATGTTCATTCAGTCTACCTTCCCCCCGCAAAACTTGAATTCAACTATGAGAATCAAGAG
- - - - - -cccatct
- - - - - - - - - - -cctctgt
- - - - - - - - - - - - - - - - - cttgatg
- - - - - - - - - - - - - - - - - - - - - cacggcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggctgt