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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtggtgtatcaatcaaaatgcatctggagactcatatccctttctttttttcagaaaagatctgttatttggtcctttactatgttcatttttatgtttcttagGAATGTTGCCAATAACCATTTTACTGGCTGGATTCCTGAATCATTGAAGAACATTAATCTGCA

Basic information

species Vitis vinifera
transcript Vv09s0002g00150.t01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110710968|gb|EE087633.1|EE087633
EST:     CAGTTTACTGGTAGTATTAATGTCCTTGCCAGTCTTCCTCTTGAAACATT                         GGATGTTGCCA-TAACCATTTTACTGGCTGGATTCCTGAATCATTGAAGAA
genomic: CAATTTACTGGTAGTATTAATGTCCTTGCCAGTCTTCCTCTTGAAACATTgtaagtggtg ... tgtttcttagGAATGTTGCCAATAACCATTTTACTGGCTGGATTCCTGAATCATTGAAGAA
EST: gi|110712955|gb|EE088453.1|EE088453
EST:     CAATTTACTGGTAGTATTAATGTCCTTGCCAGTCTTCCTCTTGAAACATT                         GAATGTTGCCAATAACCATTTT
genomic: CAATTTACTGGTAGTATTAATGTCCTTGCCAGTCTTCCTCTTGAAACATTgtaagtggtg ... tgtttcttagGAATGTTGCCAATAACCATTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcagaaaagatctgttatttggtcctttactatgttcatttttatgtttcttagGAATGTTGCCAATAACCATTTTACTGGCTGGATTCCTGAATCATTGAAGAACATTAATCTGCA
                                       tttttatgtttctt  CT-rich tract
                                      atttttatgtttctta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtggtgtatcaatcaaaatgcatctggagactcatatccctttctttttttcagaaaagatctgttatttggtcctttactatgttcatttttatgtttcttagGAATGTTGCCAATAACCATTTTACTGGCTGGATTCCTGAATCATTGAAGAACATTAATCTGCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC