1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagtgttccaatttctatgtgttctagatttctccctctctcataatactctcttctcatgacaatgatcattctattacattttcttggttttaatttaagtggttcttcaattgatttttcagGATGACAATTCAAAAGGTTGCCAATGCCCACAGGGATTCAAGGGAGATGGAGTCAAAACTTGTGAAG
species | Vitis vinifera |
transcript | Vv08s0058g01360.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAGGCTGTTGGAAGGACACCAAAGATGGCAGCACATACTCTGCTTGTGTT GATGACAATTCAAAAGGTTGCCAATGCCCACAGGGATTCAAGGGAGATGGAEST: gi|29781753|gb|CB346482.2|CB346482
genomic: GAGGCTGTTGGAAGGACACCAAAGATGGCAGCACATACTCTGCTTGTGTTgtaagtgttc ... gatttttcagGATGACAATTCAAAAGGTTGCCAATGCCCACAGGGATTCAAGGGAGATGGA
EST: GAGGCTGTTGGAAGGACACCAAAGATGGCAGCACATACTCTGCTTGTGTT GATGACAATTCAAAAGGTTGCCAATGCCCACAGGGATTCAAGGGAGATGGAEST: gi|22014493|gb|BQ799527.1|BQ799527
genomic: GAGGCTGTTGGAAGGACACCAAAGATGGCAGCACATACTCTGCTTGTGTTgtaagtgttc ... gatttttcagGATGACAATTCAAAAGGTTGCCAATGCCCACAGGGATTCAAGGGAGATGGA
EST: GAGGCTGTTGGAAGGACACCAAAGATGGCAGCACATACTCTGCTTGTGTT GATGACAATTCAAAAGGTTGCCAATGCCCACAGGGATTCAAGGGAGATGGAEST: gi|110390350|gb|EC955254.1|EC955254
genomic: GAGGCTGTTGGAAGGACACCAAAGATGGCAGCACATACTCTGCTTGTGTTgtaagtgttc ... gatttttcagGATGACAATTCAAAAGGTTGCCAATGCCCACAGGGATTCAAGGGAGATGGA
EST: GAGGCTGTTGGAAGGACACCAAAGATGGCAGCACATACTCTGCTTGTGTT GATGACAATTCAAAAGGTTGCCAATGCCCACAGGGATTCAAGGGAGATGGAEST: gi|30255039|gb|CB971486.1|CB971486
genomic: GAGGCTGTTGGAAGGACACCAAAGATGGCAGCACATACTCTGCTTGTGTTgtaagtgttc ... gatttttcagGATGACAATTCAAAAGGTTGCCAATGCCCACAGGGATTCAAGGGAGATGGA
EST: TGGAAGGACACCAAAGATGGCAGCACATACTCTGCTTGTGTC GATGACAATTCAAAAGGTTGCCAATGCCCACAGGGATTCAAGGGAGATGGAEST: gi|71875647|gb|DT024702.1|DT024702
genomic: TGGAAGGACACCAAAGATGGCAGCACATACTCTGCTTGTGTTgtaagtgttc ... gatttttcagGATGACAATTCAAAAGGTTGCCAATGCCCACAGGGATTCAAGGGAGATGGA
EST: GAGGCTGTTGGAAGGACACCAAAGATGGCAGCACATACTCTGCTTGTGTT GATGACAATTCAAAAGGTTGCCAATGCCCACAGGGATTCAAGGGAGATGGAEST: gi|110390265|gb|EC955167.1|EC955167
genomic: GAGGCTGTTGGAAGGACACCAAAGATGGCAGCACATACTCTGCTTGTGTTgtaagtgttc ... gatttttcagGATGACAATTCAAAAGGTTGCCAATGCCCACAGGGATTCAAGGGAGATGGA
EST: GAGGCTGTTGGAAGGACACCAAAGATGGCAGCACATACTCTGCTTGTGTT GATGACAATTCAAAAGGTTGCCAATGCCCACAGGGATTCAAGGGAGATGGAEST: gi|110371604|gb|EC935716.1|EC935716
genomic: GAGGCTGTTGGAAGGACACCAAAGATGGCAGCACATACTCTGCTTGTGTTgtaagtgttc ... gatttttcagGATGACAATTCAAAAGGTTGCCAATGCCCACAGGGATTCAAGGGAGATGGA
EST: AGGCTGTT-GAAGGGACACCAAAGATGGCAGCACATACTCTGCTTGTGTT GATGACAATTCAAAAGGTTGCCAATGCCCACAGGGATTCAAGGGAGATGGA
genomic: AGGCTGTTGGAA-GGACACCAAAGATGGCAGCACATACTCTGCTTGTGTTgtaagtgttc ... gatttttcagGATGACAATTCAAAAGGTTGCCAATGCCCACAGGGATTCAAGGGAGATGGA
attctattacattttcttggttttaatttaagtggttcttcaattgatttttcagGATGACAATTCAAAAGGTTGCCAATGCCCACAGGGATTCAAGGGAGATGGAGTCAAAACTTGTGAAG
tttttc CT-rich tract
attttcttggttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgttccaatttctatgtgttctagatttctccctctctcataatactctcttctcatgacaatgatcattctattacattttcttggttttaatttaagtggttcttcaattgatttttcagGATGACAATTCAAAAGGTTGCCAATGCCCACAGGGATTCAAGGGAGATGGAGTCAAAACTTGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA