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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtcaacttcattgatgtaactaactcttatatttgcatccacacacttggaaaacaaagtgagttttcatgttagcaaacctggatcatataatattaatatataaattattaactaaacagGACACCCAACTATCTGCCATTCCTAATGGCGCTCATTCAAGTGAAACTTTCTTTTCGGGTGTTATTGAGAACCAACCTATAATAAGTGGTTACTCTGGCA

Basic information

species Vitis vinifera
transcript Vv08s0058g01300.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0058g01300.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA03G04330.1 (Glycine max), 3'ss of exon 9
gtagtcaacttcattgatgtaactaactcttatatttgcatccacacacttggaaaacaaagtgagttttcatgttagcaaacctggatcatataatattaatatataaattattaactaaacagGACACCCAACTATCTGCCATTCCTAATGGCGCTCATTCAAGTGAAACTTTCTTTTCGGGTGTTATTGAGAACCAACCTATAATAAGTGGTTACTCTGGCA
                                                  |   || ||   | ||||   ||   |||||||    |   | ||  ||| |||| ||| | |   | ||| ||||| || | || ||||   || || |||||  |||||||||||||||||| || ||| ||||||  |||||| | ||||||| ||||||||||||||||| 
-------------------------------------------------gtaacaatcagttttagttcatat---agcaaactcaaacttt-tagaattgatatttaa-tcacctattaagcagGAAACACTACCATCTAATATGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATCTACCTATATTAAGTGGTTACTCTGGCC

upper sequence: Vv08s0058g01300.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA01G32810.1 (Glycine max), 3'ss of exon 12
gtagtcaacttcattgatgtaactaactcttatatttgcatccacacacttggaaaacaaagtgagttttcatgttagcaaacctggatcatataatattaatatataaattattaactaaacagGACACCCAACTATCTGCCATTCCTAATGGCGCTCATTCAAGTGAAACTTTCTTTTCGGGTGTTATTGAGAACCAACCTATAATAAGTGGTTACTCTGGCA------------------------------------------------------------------------------------------------------------
                                                   | || |   | |     ||||| | |||||||    |   | ||   || |||| ||| | |   | ||| ||||| || | || ||||   || || |||||  |||||||||||||||||| || ||| ||||||  || ||| | ||||||| |||||||||||||||||                                                                                                             
---------------------------------------------------gtaacagttacttttagttcatat-agcaaactcaaacttt-tagacttgatatttaa-tcacccattaagcaggaaacactaccatctaatatgcccaatggttctcattcaagtgaaacttcctattctggtgtttatgtgaatctacctatattaagtggttactctggccttcttcagTTACAAAAGGGATGTTCAGAAACCCACCTAAATGCGCTGTCTAAAAAATGGAACTCAGCTGGTGGTGACATGAGTTGGCATAACATTGACATGCCTGAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgttagcaaacctggatcatataatattaatatataaattattaactaaacagGACACCCAACTATCTGCCATTCCTAATGGCGCTCATTCAAGTGAAACTTTCTTTTCGGGTGTTATTGAGAACCAACCTATAATAAGTGGTTACTCTGGCA
                                         tattaac  putative branch site (score: 1)
                 atcatataatattaat  TA-rich tract