Sequence
atgc intronic sequence ATGC exonic sequencegtacctactggaaatactagataagtaattttgttaagtgttcaataatccatttgtctcataatgtgccatgcatgtgtgctatagGGATGCATGGGACATGGCTGCTGAAATCTGCCTTTCTCAGCTTAAGTCATTGGTTGATGATCCCAATGCAGAGTTTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os11g01872.1 (Oryza sativa), 3'ss of exon 7
gtacctactggaaatactagataagtaattttgttaagtgttcaataatccatttgtctcataatgtgccatgcatgtgtgctatagGGATGCATGGGACATGGCTGCTGAAATCTGCCTTTCTCAGCTTAAGTCATTGGTTGATGATCCCAATGCAGAGTTTCAG
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gtaattgatggcactagcc-attctttttatagtttagctacctcttctccattttcttta----atttcctaaatttcaattttagGGATGCATGGGACATGGCTGCAGAGATCTGCCTTTCTAAGCTTCCTCAATTAATTGCTGATCCTAATGCAGAGTTTCAG
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os12g01922.1 (Oryza sativa), 3'ss of exon 8
gtacctactggaaatactag-ataagtaattttgttaagtgttcaataatccattt---gtctcataatgtgccatgcatgtgtgctatagGGATGCATGGGACATGGCTGCTGAAATCTGCCTTTCTCAGCTTAAGTCATTGGTTGATGATCCCAATGCAGAGTTTCAG
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---------gtaattgatggcactagccattctttttatagtttagctacctcttctgcattttctttaatttcctaaattttaattttagGGATGCATGGGACATGGCTGCAGAGATCTGCCTTTCTAAGCTTCCTCAATTAATTGCTGATCCTAATGCAGAGTTTCAG
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G048067_T02 (Zea mays), 3'ss of exon 8
gtacctactggaaata-ctagataagtaattttgttaagtgttcaataatccatttgtctcataatgtgccatgcatgtgtgctatagGGATGCATGGGACATGGCTGCTGAAATCTGCCTTTCTCAGCTTAAGTCATTGGTTGATGATCCCAATGCAGAGTTTCAG
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---------gtaactaacctgacttgttctttttttt-gcattaacta--ccttttgtgtgatt-tgtaacatgc---taaatctcagGGATGCATGGGACATGGCTGCTGAGATTTGCCTTTCCAAGCTTCCTCAGTTAATTGCTGATCCAAATGCAGAGTTTCAG
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA09G41510.1 (Glycine max), 3'ss of exon 8
gtacctactggaaatactagataagtaattttgttaagtgttcaataatccatttgtctcataatgtgc-catgcatgtgtgctatagGGATGCATGGGACATGGCTGCTGAAATCTGCCTTTCTCAGCTTAAGTCATTGGTTGATGATCCCAATGCAGAGTTTCAG
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gtat-tgttggtgattatttttatgatatttttttctaaacgtgttgtcaaattttgtcaacagtttatgtttttatctgcactgcagGGATGCATGGGACATGGCTGCTGAGCTCTGCCTCTCTCAACTTCCGTCTTTAGTTGAGGATCCTAATGCTGAATTTCAG
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA18G44210.1 (Glycine max), 3'ss of exon 8
gtacctactggaaatactagata-agtaattttgtt--aagtgttcaataatccatttgtctcataatgtgccatgcatgtgtgctatagGGATGCATGGGACATGGCTGCTGAAATCTGCCTTTCTCAGCTTAAGTCATTGGTTGATGATCCCAATGCAGAGTTTCAG
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gtat-tgttggtgattattgttatgataatttttttctaaacgtgttgccaacttttgtcaacagtttatgtttt-tatccgcactgcagGGATGCATGGGACATGGCTGCTGAGCTCTGCCTCTCTCAACTTCCATCTTTAGTTGAGGATCCTAATTCTGAATTTCAG
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT5G01770.1 (Arabidopsis thaliana), 3'ss of exon 8
gtacctactggaaatactagataagtaattttgttaagtgttcaa-taatccatttgtctcataatgtgccatgcatgtgtgctatagGGATGCATGGGACATGGCTGCTGAAATCTGCCTTTCTCAGCTTAAGTCATTGGTTGATGATCCCAATGCAGAGTTTCAG
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gtattggacgttatccctagttt-gcattttgatgaattgtgtgtctgagctctttacctc------cgcta-atagctgttttccagGGATGCATGGGACATGGCTGCTGAAATCTGCCTTTCTCAGCTTCCTCAATTTTTTCTGGACCCAAATACGGAGTTTCAG
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G08850.1 (Arabidopsis thaliana), 3'ss of exon 8
gtacctactggaaatactagataagtaattttgttaagtgttcaataatccatttgtctcataatgtgccatgcatgtgtgctatagGGATGCATGGGACATGGCTGCTGAAATCTGCCTTTCTCAGCTTAAGTCATTGGTTGATGATCCCAATGCAGAGTTTCAG
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gtattcaacaagaaccatattcttctg-ttatgtaaaatgttatgtgtctagattttgactcagctatccgt-tgcatgcttttcagGGATGCATGGGACATGGCTGCTGAAATCTGTCTTTCTCAGCTTCCCCAACTTGTTCTGGACCCAAGCACAGAGTTCCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttaagtgttcaataatccatttgtctcataatgtgccatgcatgtgtgctatagGGATGCATGGGACATGGCTGCTGAAATCTGCCTTTCTCAGCTTAAGTCATTGGTTGATGATCCCAATGCAGAGTTTCAG
ttcaataat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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gtacctactggaaatactagataagtaattttgttaagtgttcaataatccatttgtctcataatgtgccatgcatgtgtgctatagGGATGCATGGGACATGGCTGCTGAAATCTGCCTTTCTCAGCTTAAGTCATTGGTTGATGATCCCAATGCAGAGTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT