1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagtcttatttgataattcttcttattttgctctcttagaaattgattgtcacatttctttattctatgccctcattacacccttctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGTTGTCAAGCTCCAGGAAGAACTTGATATTGATGTGCTCGTCCATGGTGAA
species | Vitis vinifera |
transcript | Vv08s0056g01570.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGTEST: gi|71886245|gb|DT035300.1|DT035300
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGTEST: gi|161708072|gb|FC055712.1|FC055712
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA GATCTCTGAGGAGGGTTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGTEST: gi|110374362|gb|EC939061.1|EC939061
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: GCCGTGAATACAAGGCTAAAAA GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGTEST: gi|110404481|gb|EC969603.1|EC969603
genomic: GCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGTEST: gi|110429998|gb|EC996518.1|EC996518
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGTEST: gi|110426553|gb|EC992966.1|EC992966
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: GTGAATACAAGGCTAAAAA GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGTEST: gi|110376456|gb|EC941522.1|EC941522
genomic: GTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGTEST: gi|161721696|gb|FC070122.1|FC070122
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGTEST: gi|110383670|gb|EC948053.1|EC948053
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGTEST: gi|110698652|gb|EE076398.1|EE076398
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGTEST: gi|110402853|gb|EC963625.1|EC963625
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGTEST: gi|110690135|gb|EE066968.1|EE066968
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGTEST: gi|33408742|gb|CF214369.1|CF214369
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGTEST: gi|161721618|gb|FC070828.1|FC070828
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGTEST: gi|110719746|gb|EE095143.1|EE095143
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
EST: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA GATCTCTGAAGANGG-TTATGTTAAGGCCATCAAAGAAGAAATCAACAAGGEST: gi|33409401|gb|CF215028.1|CF215028
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGA-GGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGG
EST: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAA GATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
genomic: CCTCAGACCATGGATCTCAGGAGAGTCCGCCGTGAATACAAGGCTAAAAAgtgagtctta ... ctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGT
aattgattgtcacatttctttattctatgccctcattacacccttctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGTTGTCAAGCTCCAGGAAGAACTTGATATTGATGTGCTCGTCCATGGTGAA
aattgat putative branch site (score: 4)
ccctcattacaccctt putative PPT
atttctttattctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcttatttgataattcttcttattttgctctcttagaaattgattgtcacatttctttattctatgccctcattacacccttctctttttagGATCTCTGAGGAGGATTATGTTAAGGCCATCAAAGAGGAAATCAACAAGGTTGTCAAGCTCCAGGAAGAACTTGATATTGATGTGCTCGTCCATGGTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC