Skip to another splice site:
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 5'  3'   		3  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggatattggtttaagtttttactcaaactttaccccctttatacatgtatttttgggttgatatgctgagtttctaaagttgtggattgtctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGCAATGATGTTCCGGGTGGTGGGCTTGCCAATGTTGCAGCAACTGTGATGA

Basic information

species Vitis vinifera
transcript Vv08s0056g00200.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0056g00200.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA18G45120.1 (Glycine max), 3'ss of exon 5
tggatattggtttaagtttttactcaaactttaccccctttatacatgtatttttgggttgatatgctga-gtttctaaagttgtggattgtct-----gactt-agGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGCAATGATGTTCCGGGTGGTGGGCTTGCCAATGTTGCAGCAACT-GTGATGA---
        |||    | ||   | |     | |    |   |   ||||       ||| ||  |||  | ||| ||  |  ||||     |||     || || ||| ||| |  |    || |    ||    | |  |  | ||  | | |  | |   ||      | |  |    ||   ||| |||||  ||||   | | |   
-------aggtcctggattggcccctggtgtcagattccgcaacaatgttccaactggtggacttgccaacgttgctgcaactgtgatgaatcttcatggatttgagGCTCCCAGCGACTACGAGACAACTCTGATAGAAGTAGTTGATA-ACTAGGAACCAATAGAT--GATTTTTTTTTTTTTAAT-TTGCAAAAACTCAGGGTAAGCA

upper sequence: Vv08s0056g00200.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA09G40690.1 (Glycine max), 3'ss of exon 8
--tggatattgg---tttaagtttttactcaaactttaccccctttatacatgtatttttgggttgatatgctgagtttctaaagttgtggattgtctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGCAATGATGTTCCGGGTGGTGGGCTTGCCAATGTTGCAGCAACTGTGATGA
    |||   ||   ||    ||| ||  |   | |        ||| |||   |  ||    ||| |   |  | | ||  |   | |   ||| |||  |||||| || ||||| || || ||||| ||| ||||  ||||||| |||||||| |||||||||||    || ||||||||||| ||||| |||||||||||||
ttaagatgcaggcatttcttctttatatacttgcatagtaattattagacaccaaccttaattttggtt--ccaaatctc--atacttttccttg-ctggtttagGTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGAAATGATGTTCCAACCGGCGGGCTTGCCAACGTTGCTGCAACTGTGATGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33406503|gb|CF212130.1|CF212130
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|30251274|gb|CB969007.1|CB969007
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGANGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|71887138|gb|DT036193.1|DT036193
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|110386858|gb|EC951490.1|EC951490
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|71881475|gb|DT030530.1|DT030530
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTG
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTG
EST: gi|110361200|gb|EC924656.1|EC924656
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|77583526|gb|DV220799.1|DV220799
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|29781711|gb|CB346373.2|CB346373
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|110687320|gb|EE064627.1|EE064627
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|30252044|gb|CB968683.1|CB968683
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|110424833|gb|EC991206.1|EC991206
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|110366484|gb|EC930392.1|EC930392
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|30125892|gb|CB911231.1|CB911231
EST:     TGGACAAGACTGGAAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|30301264|gb|CB978058.1|CB978058
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|110725047|gb|EE101410.1|EE101410
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|28967433|gb|CB346466.1|CB346466
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|33406588|gb|CF212215.1|CF212215
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|30131098|gb|CB916437.1|CB916437
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|33403660|gb|CF209287.1|CF209287
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|28962723|gb|CB341756.1|CB341756
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|71888286|gb|DT037341.1|DT037341
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|30301394|gb|CB978188.1|CB978188
EST:     TGGACAAGACTGGCAAAATTCAAATTTTTACATCTCACACTTTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|110724634|gb|EE100633.1|EE100633
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|28967351|gb|CB346384.1|CB346384
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|33403584|gb|CF209211.1|CF209211
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|30305831|gb|CB982625.1|CB982625
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|33409439|gb|CF215066.1|CF215066
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|110361556|gb|EC925038.1|EC925038
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|110716747|gb|EE091997.1|EE091997
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|110709676|gb|EE085346.1|EE085346
EST:     TGGACAAGACTGGAAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAAATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|110411447|gb|EC977161.1|EC977161
EST:     TGGACAAGACTGGAAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|29783243|gb|CB349288.2|CB349288
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|29783288|gb|CB349373.2|CB349373
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|30301324|gb|CB978118.1|CB978118
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|30251262|gb|CB968995.1|CB968995
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|30251347|gb|CB969080.1|CB969080
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|30252132|gb|CB968771.1|CB968771
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|110717711|gb|EE093807.1|EE093807
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|30300293|gb|CB977087.1|CB977087
EST:     CTGGC-AAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: CTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|110391170|gb|EC956127.1|EC956127
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|30251358|gb|CB969091.1|CB969091
EST:     TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: TGGACAAGACTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
EST: gi|30300372|gb|CB977166.1|CB977166
EST:     CTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCT                         GTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC
genomic: CTGGCAAAATTCAAATTCTTACATCTCACACTCTTCAACCTgtaagtattg ... tctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtatttttgggttgatatgctgagtttctaaagttgtggattgtctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGCAATGATGTTCCGGGTGGTGGGCTTGCCAATGTTGCAGCAACTGTGATGA
                          tttctaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tggatattggtttaagtttttactcaaactttaccccctttatacatgtatttttgggttgatatgctgagtttctaaagttgtggattgtctgacttagGTTCCTATTGCAATCGGGGGTCCTGGACTGGCGGCTGGTGTGAGATTCCGCAATGATGTTCCGGGTGGTGGGCTTGCCAATGTTGCAGCAACTGTGATGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - ctcaaac
- - - - - - - - - - - - - - - - -ccccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gggttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtgga