Sequence
atgc intronic sequence ATGC exonic sequence...ttgcattccatgtcagcttttaaagtttacctgtcgttttgcacatgcatggaaatattcagattttaccctcttaagcaacaattatatttctaaacagGTGCCATGGTCCTTGCTGATCGTGGATTATGCTGTATTGATGAGTTTGACAAAATGTCAGCAGAACATCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g03290.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os05g38850.1 (Oryza sativa), 3'ss of exon 8
ttgcattccatgtcagcttttaaagtttacctgtcgttttgcacatgcatggaaatattcagattttaccctcttaagcaacaattatatttc--taaacagGTGCCATGGTCCTTGCTGATCGTGGATTATGCTGTATTGATGAGTTTGACAAAATGTCAGCAGAACATCAG
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gtaggatgcaagtgggtctggtagtattttttttc--ttgactaatttaatggcacatacataaagtggcctatcaaataattttgaccctttggtttacagGTGCCATGGTCCTTGCTGACCGTGGAATATGCTGTATCGATGAGTTCGATAAAATGTCAGCAGAGCATCAG
upper sequence: Vv08s0040g03290.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G163658_T01 (Zea mays), 3'ss of exon 7
ttgcattccatgtcagcttttaaagtttacctgtcgttttgcacatgcatggaaatattcagattttaccc---tcttaagcaacaattatatttctaa---acagGTGCCATGGTCCTTGCTGATCGTGGATTATGCTGTATTGATGAGTTTGACAAAATGTCAGCAGAACATCAG
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---cgttccaaat--gctctttgttctggtgta-cgttttctttgtggttttagaatttgcaatgcgatcaaaaattcaaaattaagttgagtccttgacttacagGTGCCATGGTCCTTGCTGATCGTGGAATATGCTGTATTGATGAGTTTGATAAAATGTTTACAGAGCATCAG
upper sequence: Vv08s0040g03290.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA19G36230.1 (Glycine max), 3'ss of exon 7
ttgcattccatgtcagcttttaaagtttacctgtcgttttgcacatgcatg--gaaatattcagattttaccctct-taagcaacaattatatttctaaacagGTGCCATGGTCCTTGCTGATCGTGGATTATGCTGTATTGATGAGTTTGACAAAATGTCAGCAGAACATCAG
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---ctttcttttttggtgcttgttctgtttcttaagctcagcagaatcaagttacaaaaaattgttagcattttctgtgaatgatggttggaattcatgttagGTGCTATGGTGCTGGCTGACAGTGGATTGTGCTGTATTGACGAGTTTGATAAAATGTCAACAGAGCATCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcatggaaatattcagattttaccctcttaagcaacaattatatttctaaacagGTGCCATGGTCCTTGCTGATCGTGGATTATGCTGTATTGATGAGTTTGACAAAATGTCAGCAGAACATCAG
tatttct CT-rich tract
aacaattatatttcta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgcattccatgtcagcttttaaagtttacctgtcgttttgcacatgcatggaaatattcagattttaccctcttaagcaacaattatatttctaaacagGTGCCATGGTCCTTGCTGATCGTGGATTATGCTGTATTGATGAGTTTGACAAAATGTCAGCAGAACATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - -ccatgtc
- - - - - - - - - - - - - - -cctgtcg
- - - - - - - - - - - - - - - - - - - - -cacatgc
- - - - - - - - - - - - - - - - - - - - - - - - - ggaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaacaa