Sequence
atgc intronic sequence ATGC exonic sequence...taatggaatggaatggttttgatgaatattcttccacaatttttgcaggctttgtttgcattttattattaattcagtgctcatttgaaattttgaacagGAATTCTGCTTCTGAACTTATAAAGCAAAAACTGGTGTTTGCTGGAAGTGAAGAGGGGAAGCTTCTTGCTCTTCGTCAAAGCTTTGCAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g02300.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA19G36300.1 (Glycine max), 3'ss of exon 8
-taa---tggaatggaatggttttgatgaatattcttc----cacaatttttgcaggctttgtttgcattttattattaattcagtgctcatt--tgaaattttgaacagGAATTCTGCTTCTGAACTTATAAAGCAAAAACTGGTGTTTGCTGGAAGTGAAGAGGGGAAGCTTCTTGCTCTTCGTCAAAGCTTTGCAGAG
||| || || || | | | || | || | | || | |||| | | |||||| | ||| || | | || | ||||||| ||||||||| |||||||||||| |||| ||| ||||||||||||| || || ||||| || |||||||||||||||| |||
gtaagtttgctgcaaaacatttacaaacatggtgctcctgagcatattgttagttaatacagttttcttcacattattttgttgatgcccaatgcttttatgcgcatcagGAATATGGCTTCTGAAACAATAAAGCAAAAATTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTCTAGCAATTCGTCAAAGCTTTGCCGAG
upper sequence: Vv08s0040g02300.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA03G33590.1 (Glycine max), 3'ss of exon 8
-taa---tggaatggaatggttttgatgaatattcttccacaatttttgcaggct----ttgtttgcattttattattaattcagtgctca--tttgaaattttgaacagGAATTCTGCTTCTGAACTTATAAAGCAAAAACTGGTGTTTGCTGGAAGTGAAGAGGGGAAGCTTCTTGCTCTTCGTCAAAGCTTTGCAGAG
||| || || || | | | || | | ||||| | | |||| | | |||||| | | || | | | || | | ||||||| ||||||||| |||||||||||| |||| ||| ||||||||||||| || || ||||| || |||||||||||||||| |||
gtaagtttgttgcaaaacatttacaaacatggtgctcctaagcattttgttagttaatacagttttcttcacattatttagttgatgtctaattcttttatgtgcatcagGAATATGGCTTCTGAAACAATAAAGCAAAAATTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTCTAGCAATTCGTCAAAGCTTTGCCGAG
upper sequence: Vv08s0040g02300.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G09720.1 (Arabidopsis thaliana), 3'ss of exon 9
taatggaatggaatggttttgatgaatattcttccacaatttttgcaggctttgtt-tgcattttattattaattcagtgctcatttgaaattttga-acagGAATTCTGCTTCTGAACTTATAAAGCAAAAACTGGTGTTTGCTGGAAGTGAAGAGGGGAAGCTTCTTGCTCTTCGTCAAAGCTTTGCAGAG
| || ||| | | | || || | || | | ||| ||||| || | | | ||| | || | | || || | || |||||| | |||||||| ||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||||
-gtaagtatagaaaacatgatagtatgatactgaagcttattatagatacttcacaacatattttgaagcaaaatgatcttaccttttactattcaatatagAAACACAGCATCTGAAACCGTCAAGCAAAAGCTGGTTTTTGCTGGAAGTGAAGAAGGGAAACTTCTTGCTCTTCGCCAAAGCTTTGCAGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caggctttgtttgcattttattattaattcagtgctcatttgaaattttgaacagGAATTCTGCTTCTGAACTTATAAAGCAAAAACTGGTGTTTGCTGGAAGTGAAGAGGGGAAGCTTCTTGCTCTTCGTCAAAGCTTTGCAGAG
tattaat putative branch site (score: 2)
tttgtttgcattttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taatggaatggaatggttttgatgaatattcttccacaatttttgcaggctttgtttgcattttattattaattcagtgctcatttgaaattttgaacagGAATTCTGCTTCTGAACTTATAAAGCAAAAACTGGTGTTTGCTGGAAGTGAAGAGGGGAAGCTTCTTGCTCTTCGTCAAAGCTTTGCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
-aatggaa
- - - - - - - - - - - - - - - cttccac
- - - - - - - - - - - - - - - - - - - - ttttgca