Sequence
atgc intronic sequence ATGC exonic sequence...atgtaggattcaaaaactatatacatgtaatcaaattgatgagaattttttacctttcaattctttccattggaatttgactgtttacctttctatatagGTTGCACTGAGTACTCTGTTGCTCATTATTTATAATTGTTCTGATCAAGTTCTCACAACTCGAGAAAAAAGACAGGCGAAATCTAGGGAAGCTGCAATAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g01620.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA13G20750.1 (Glycine max), 3'ss of exon 5
atgtaggattcaaaaactatatacatgtaatcaaat---tgatgagaattttttacctttcaattctttccattggaatttgactgtttacctttctatatagGTTGCACTGAGTACTCTGTTGCTCATTATTTATAATTGTTCTGATCAAGTTCTCACAACTCGAGAAAAAAGACAGGCGAAATCTAGGGAAGCTGCAATAA
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gcatatgctctgaaataagatgaaatattgtcaaatattttccaagaatttcttctccctatgtctagtttagcata-tttgata--ttatttccccttgtagGTTGCATTGAGTACTCTCTTGATCTTCATTTATAATTGTTCTGATCAAGTTCTAGTTACTCGAGAAAGGAGAAAGGCTAAATCCAGGGAATCAGCTGCTA
upper sequence: Vv08s0040g01620.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA10G06550.1 (Glycine max), 3'ss of exon 5
atgtaggattcaaaa-actatatacatgtaatcaaat---tgatgagaattttttacctttcaattctttccattggaatttgactgtttacctttctatatagGTTGCACTGAGTACTCTGTTGCTCATTATTTATAATTGTTCTGATCAAGTTCTCACAACTCGAGAAAAAAGACAGGCGAAATCTAGGGAAGCTGCAATAA
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ttttagcatgtgcaataacatgaa-atattgtcaaatattttccaagaatttcttctccctatgtctagtttatcata-tttgata--ctattttcccttgtagGTTGCATTGAGTACTCTCCTGATCTTCATTTATAATTGTTCTGATCAAGTTCTAGTTACTCGAGAAAGGAGAAAGGCTAAATCCAGGGAATCTGCTGCTA
upper sequence: Vv08s0040g01620.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT2G37010.1 (Arabidopsis thaliana), 3'ss of exon 7
atgtaggattcaaaaactatatacatgtaatcaaattgatgagaattttttacctttcaattctttccattggaatttgactgtttacctttctatat--agGTTGCACTGAGTACTCTGTTGCTCATTATTTATAATTGTTCTGATCAAGTTCTCACAACTCGAGAAAAAAGACAGGCGAAATCTAGGGAAGCTGCAATAA
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----------------------gtaagttgttag-ttaattagaatacattttgctttaaaattt---gttggaaattatattttcgttattgtatatatagGCATCACTAAGTCTTCTCATGATCATGGTTTATAACTGTTCTGATCAAGTTCTCGCCACTCGAGAAAAAAGACAAGCAAAGTCGAGAGAAGCTGCAGCGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttttacctttcaattctttccattggaatttgactgtttacctttctatatagGTTGCACTGAGTACTCTGTTGCTCATTATTTATAATTGTTCTGATCAAGTTCTCACAACTCGAGAAAAAAGACAGGCGAAATCTAGGGAAGCTGCAATAA
atttgac putative branch site (score: 4)
ctgtttacctttct CT-rich tract
tttctatata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgtaggattcaaaaactatatacatgtaatcaaattgatgagaattttttacctttcaattctttccattggaatttgactgtttacctttctatatagGTTGCACTGAGTACTCTGTTGCTCATTATTTATAATTGTTCTGATCAAGTTCTCACAACTCGAGAAAAAAGACAGGCGAAATCTAGGGAAGCTGCAATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - caaaaac
- - - - - - - - - - - - - - aatcaaa
- - - - - - - - - - - - - - - - - - -gatgagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgactgt