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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagagaaggaaatcattttagttgttccatgtagaattggagttttaacggatggataagcagtaatcagaaatttaaaggaaatatttggatgatcatcttttcacagGATAAGCATAATCCTCACCTGGAGCTTACTTTAAGTACTCGTAAAAAAATATCATCAGTTTTGGAACATCTTACTCGCAAATGGGGCAATTCTGGCATAG

Basic information

species Vitis vinifera
transcript Vv08s0040g01460.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g01460.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA02G05420.1 (Glycine max), 3'ss of exon 9
gtaagtagagaaggaaatcattttagttgttccatgtagaattggagttttaacggatggataagcagtaatcagaaatttaaaggaaatatttggatgatcatcttttcacagGATAAGCATAATCCTCACCTGGAGCTTACTTTAAGTACTCGTAAAAAAATATCATCAGTTTTGGAACATCTTACTCGCAAATGGGGCAATTCTGGCATAG
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gtgagtataaaagaaaaccaacaagcatcttactt-tagaaatgta----------------aaattgcttttggaaact---atcatatctttatcttttttccccttctcagGATAAGCATAATCCACACCTGGAGCTTACACTTAGTACTCGAAAGAAGATATCATCAATTTTAGAACATCTAAACCGTAAATGGGGTAATTCAAGCATAG

upper sequence: Vv08s0040g01460.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA16G23840.2 (Glycine max), 3'ss of exon 8
gtaagtagagaaggaaatcattttagttgttccatgtagaattggagttttaacggatggataagcagtaatcagaaatttaaaggaaatatttggatgatcatcttttcacagGATAAGCATAATCCTCACCTGGAGCTTACTTTAAGTACTCGTAAAAAAATATCATCAGTTTTGGAACATCTTACTCGCAAATGGGGCAATTCTGGCATAG
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gtgagtataaaagaaaacca---------------acaagaatcttactttagca-atgtaaaagtgctt-ttggaaact---atcatatctttttctttttttcccctcttagGATAAGCATAATCCACACCTGGAGCTTACACTTAGTACTCGAAAGAAGATATCATCAATTTTAGAACATCTAAACCGTAAATGGGGTAATTCAAGCATAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gataagcagtaatcagaaatttaaaggaaatatttggatgatcatcttttcacagGATAAGCATAATCCTCACCTGGAGCTTACTTTAAGTACTCGTAAAAAAATATCATCAGTTTTGGAACATCTTACTCGCAAATGGGGCAATTCTGGCATAG
                                         tcatcttttc  CT-rich tract
 agaaatttaaaggaaa  TA-rich tract