1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcatactcagttaaggatcaaaattggctcaacaacattactaatcatgatgggtgtttgctttattccatattttatacactatctcttttctatacagATGGGGATCACCACAGTGGATTCATCAGTATCTGGTCTTGGGGGCTGCCCATATGCTAAAGGTGCTTCTGGGAATGTTGCGACTGAGGATGTTGTTTACA
species | Vitis vinifera |
transcript | Vv08s0040g01170.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTCACGATACTTATGGGCAAGCTCTTTCAA-TATTCTAGCATCACTCCCA ATGGGGATCACCACAGTGGGAT-CATCAGTATCTGGTCTTGGGEST: gi|110402734|gb|EC960886.1|EC960886
genomic: TTCACGATACTTATGGGCAGGCTCTTTCAAATATTCTAGCATCACTCCAAgtaagcaacc ... ttctatacagATGGGGATCACCACAGTGG-ATTCATCAGTATCTGGTCTTGGG
EST: TTCACGATACTTATGGGCAGGCTCTTTCAAATATTCTAGCATCACTCCAA ATGGGGATCACCACAGTGGATTCATCAGTATCTGGTCTTGGGGGCTGCCCAEST: gi|37184311|gb|CF603665.1|CF603665
genomic: TTCACGATACTTATGGGCAGGCTCTTTCAAATATTCTAGCATCACTCCAAgtaagcaacc ... ttctatacagATGGGGATCACCACAGTGGATTCATCAGTATCTGGTCTTGGGGGCTGCCCA
EST: TTCACGATACTTATGGGCAGGCTCTTTCAAATATTCTAGCATCACTCCAA ATGGGGATCACCACAGTGGATTCATCAGTATCTGGTCTTGGGGGCTGCCCA
genomic: TTCACGATACTTATGGGCAGGCTCTTTCAAATATTCTAGCATCACTCCAAgtaagcaacc ... ttctatacagATGGGGATCACCACAGTGGATTCATCAGTATCTGGTCTTGGGGGCTGCCCA
catgatgggtgtttgctttattccatattttatacactatctcttttctatacagATGGGGATCACCACAGTGGATTCATCAGTATCTGGTCTTGGGGGCTGCCCATATGCTAAAGGTGCTTCTGGGAATGTTGCGACTGAGGATGTTGTTTACA
cactatctcttttct CT-rich tract
tttattccatatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatactcagttaaggatcaaaattggctcaacaacattactaatcatgatgggtgtttgctttattccatattttatacactatctcttttctatacagATGGGGATCACCACAGTGGATTCATCAGTATCTGGTCTTGGGGGCTGCCCATATGCTAAAGGTGCTTCTGGGAATGTTGCGACTGAGGATGTTGTTTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
gcatact
- - - - - - - - -tcaaaat
- - - - - - - - - - - - - - -caacaac
- - - - - - - - - - - - - - - - - - - - - - - -tgatggg