1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctccctcttgtggttattgtagatgaaaatccagcattgcctgatgacttgggccacaatgtgcatggacttcaacacattttctcttcttgattaacagGTTTGGTGGTGGGGTTGCACATTCATTCACTGGAAGTGCAGAAGATTGTAATAAACTTCTTTCATTCAATAATCTGTTTATAG
species | Vitis vinifera |
transcript | Vv08s0032g01170.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CGTGCTGCTGCTGAAGATTTTTGTGATATTTTAGGGCGAAATATGGACAG GTTTGGTGGTGGGGTTGCACATTCATTCACTGGAAGTGCAGAAGATCGTAAEST: gi|87585201|gb|DY474017.1|DY474017
genomic: CGTGCTGCTGCTGAAGATTTTTGTGATATTTTAGGGCGAAATATGGACAGgtgagattgc ... tgattaacagGTTTGGTGGTGGGGTTGCACATTCATTCACTGGAAGTGCAGAAGATTGTAA
EST: CGTGCTGCTGCTGAAGATTTTTGTGATATTTTAGGGCGAAATATGGACAG GTTTGGTGGTGGGGTTGCACATTCATTCACTGGAAGTGCAGAAGATCGTAA
genomic: CGTGCTGCTGCTGAAGATTTTTGTGATATTTTAGGGCGAAATATGGACAGgtgagattgc ... tgattaacagGTTTGGTGGTGGGGTTGCACATTCATTCACTGGAAGTGCAGAAGATTGTAA
gacttgggccacaatgtgcatggacttcaacacattttctcttcttgattaacagGTTTGGTGGTGGGGTTGCACATTCATTCACTGGAAGTGCAGAAGATTGTAATAAACTTCTTTCATTCAATAATCTGTTTATAG
tcttgat putative branch site (score: 4)
cacattttctcttctt CT-rich tract
ttgattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctccctcttgtggttattgtagatgaaaatccagcattgcctgatgacttgggccacaatgtgcatggacttcaacacattttctcttcttgattaacagGTTTGGTGGTGGGGTTGCACATTCATTCACTGGAAGTGCAGAAGATTGTAATAAACTTCTTTCATTCAATAATCTGTTTATAG
- ccctctt
- - - - - - - - - - - - gaaaatc
- - - - - - - - - - - - - - - - - - -tgcctga
- - - - - - - - - - - - - - - - - - - - - - tgacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - gccacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgga