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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgcttgagtgaacttggtgtgccttttgaatttccatttgtcccaagtgaaacaggtttcttagttttcatctctgctcctttgcctcttctggttttatgtagGTATATTCTCTGTGTGGAAGAACTGTATCCAGCATTTCTGCAGGAAAGTACTGGATTGCCGCAGTCACAGCTACAGGTGATGTTTATATGTGGGATGGGA

Basic information

species Vitis vinifera
transcript Vv08s0032g00280.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0032g00280.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA16G04300.1 (Glycine max), 3'ss of exon 6
gttttgcttgag---tgaacttggtgtgccttttgaatttccatttgtcccaagtgaaacaggtttcttagttttcatctctgctcctttgcctcttctggttttatgtagGTATATTCTCTGTGTGGAAGAACTGTATCCAGCATTTCTGCAGGAAAGTACTGGATTGCCGCAGTCACAGCTACAGGTGATGTTTATATGTGGGATGGGA
||| |  ||  |   |||| ||       |   || ||||   |||  || |    ||||| |||  |||       |  |  |   ||||  | || |  ||||    || | ||| || |||||||||| | | |    ||||| || || ||||||||||||| ||| ||||| |||||||||||||||||||| |||||||||||||
gttcttattatgctctgaatttttctcttcacatgtattttatttttcccgagacaaaacatgttgattaaaaacacttcccccctttttgtttatttt--tttttaacagTTGTATGCTATGTGTGGAAGGAATATGGTGAGCATATCAGCTGGAAAGTACTGGACTGCAGCAGTTACAGCTACAGGTGATGTTTACATGTGGGATGGGA

upper sequence: Vv08s0032g00280.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA19G29100.1 (Glycine max), 3'ss of exon 6
---gttttgcttgagtgaacttggtgtgccttttgaatttccatttgtcccaagtgaaacaggtttcttagttttcatctctgctcctttgcctct-tctggttttatgtagGTATATTCTCTGTGTGGAAGAACTGTATCCAGCATTTCTGCAGGAAAGTACTGGATTGCCGCAGTCACAGCTACAGGTGATGTTTATATGTGGGATGGGA
    || |  |    |||| ||       |   ||  |||   |||  || |    ||||| |||  |||    |  |  |  |   ||||  |   | |  ||||    || ||||| || |||| ||||| | | |    ||||| || || ||||||||||||| ||| ||||| |||||||||||||||||||| |||||||||||||
gttcttattatcctctgaaattttctcttcacgtgttttttatttttcccgagacaaaacatgttgattaaaaatacttccccccgttttgttttaatttttttttgaacagTTATATGCTATGTGCGGAAGGAATATGGTGAGCATATCAGCTGGAAAGTACTGGACTGCAGCAGTTACAGCTACAGGTGATGTTTACATGTGGGATGGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacaggtttcttagttttcatctctgctcctttgcctcttctggttttatgtagGTATATTCTCTGTGTGGAAGAACTGTATCCAGCATTTCTGCAGGAAAGTACTGGATTGCCGCAGTCACAGCTACAGGTGATGTTTATATGTGGGATGGGA
               ttttcatctctgctcc  CT-rich tract
                                             ttttatgta  TA-rich tract