Sequence
atgc intronic sequence ATGC exonic sequence...ctcattctctatgtgtccattgcactgtagtttgtttcaatatcagatccattacaatagagttgtgcttaaatttgtgcaaaacgttctcttatggcagGTGATAGATGAATTTGATCAGAATGTACATTTTGTTGAAATTGACATTGAGGAAGATCCCGAAATAGCAGAGGCAGCTGGAATTATGGGTACACCATGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g08760.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os07g46410.1 (Oryza sativa), 3'ss of exon 8
ctcattctctatgtgtccattgcactgtagtttgtttcaatatcagatccattacaatag-----agttg-tgcttaa-atttgtgcaaaacgttctcttatggcagGTGATAGATGAATTTGATCAGAATGTACATTTTGTTGAAATTGACATTGAGGAAGATCCCGAAATAGCAGAGGCAGCTGGAATTATGGGTACACCATGTG
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----ttctacagaagttc--cgttctgttagtcatgcttgtgttagttttgttgttaacgttgctagttgctacttggcacttgctaatattgatatcttttt-cagGTTATAGATGAGTACAACGAACACGTTCATTTTGTCGAAATTGACATCGAGGAGGATCCTGAAATAGCAGAAGCTGCAGGCATCATGGGAACACCATGTG
upper sequence: Vv08s0007g08760.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G136522_T02 (Zea mays), 3'ss of exon 8
ctcattctctatgtgtccattgcactgtagtttgtttcaatatcagatccat-tacaatag----agttg--tgcttaaatttgtgcaaaacgttctcttatg--gcagGTGATAGATGAATTTGATCAGAATGTACATTTTGTTGAAATTGACATTGAGGAAGATCCCGAAATAGCAGAGGCAGCTGGAATTATGGGTACACCATGTG
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--------acatgctgctattgtgatgcaaaat-tctcattttatgatctgtgtatcttagtttaggttgcttgttttattacttgctaattgctaatttatcttgcagGTCATAGACGAGTACGGCGAGTTTGTTCATCTTGTTGAAATTGACATCGAGGAGGATCCTGAAATAGCAGAAGCTGCAGGCATCATGGGAACACCTTGTG
upper sequence: Vv08s0007g08760.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA02G33070.1 (Glycine max), 3'ss of exon 8
ctcattctctat---gtgtccattg-cactgtagtttgtttcaatatcagatccattacaatagagttgtgcttaaatttgtgcaaaacgttctcttatggcagGTGATAGATGAATTTGATCAGAATGTACATTTTGTTGAAATTGACATTGAGGAAGATCCCGAAATAGCAGAGGCAGCTGGAATTATGGGTACACCATGTG
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-ctactccccatttcatgttaaatgtcactttatttattttcaatcttaaattgaacagaaaatatttattttaatgtttttgtgaca---tctcccatttcagGTGATTGATGAATTTGATCAGAATGTACATTTTGTTGAAATTGATATAGAGGAAGATCCAGAAATAGCAGAAGCAGCTGGAATAATGGGTACTCCATGTG
upper sequence: Vv08s0007g08760.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA10G13190.1 (Glycine max), 3'ss of exon 8
--ctcattctc--tatgtgtccattgcactgtagtttgtttcaatatcagatccattacaatagagttgtgcttaaatttgtgcaaaacgttctcttatggcagGTGATAGATGAATTTGATCAGAATGTACATTTTGTTGAAATTGACATTGAGGAAGATCCCGAAATAGCAGAGGCAGCTGGAATTATGGGTACACCATGTG
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aactacttcccatttcatgttaaatgt-cactatttattttcaatcttaaattgaacaggaaatatttattttaatgtttttctgacatgtcctattt---cagGTGATTGATGAATTTGATCAGAATGTTCATTTTGTCGAAATTGATATAGAGGAAGATCCAGAAATAGCTGAAGCAGCTGGAATAATGGGTACTCCATGTG
upper sequence: Vv08s0007g08760.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT2G41680.1 (Arabidopsis thaliana), 3'ss of exon 8
ctcattctctatgtgtccattgcactgtagtttgtttcaatatcagatccattacaatagagttgtgcttaaatttgtgcaaaacgttctc---ttatggcagGTGATAGATGAATTTGATCAGAATGTACATTTTGTTGAAATTGACATTGAGGAAGATCCCGAAATAGCAGAGGCAGCTGGAATTATGGGTACACCATGTG
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----gtattcctttattagtcgaaatgaaactcatcggaaga---gatctttttggactgatttacttgaccatttgttcacttctccttcattttgtttcagGTGGTCGATGAGTATAACCATGATGTGCATTTTGTTGAGATTGACATCGAGGAAGATCAAGAAATTGCTGAAGCAGCTGGAATTATGGGAACCCCATGTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122692015|gb|EC987561.1|EC987561EST: CTGCACCAACATGTGGTCCATGTAGGACCTTGAAGCCAATTTTTAGCAAG GTGATAGATGAATTTGATCAGAATGTACATTTTGTTGAAATTGACATTGAG
genomic: CTGCACCAACATGTGGTCCATGTAGGACCTTGAAGCCAATTCTTAGCAAGgtaccttagt ... cttatggcagGTGATAGATGAATTTGATCAGAATGTACATTTTGTTGAAATTGACATTGAG
EST:
gi|122690039|gb|EC946934.1|EC946934EST: CTGCACCAACATGTGGTCCATGTAGGACCTTGAAGCCAATTCTTAGCAAG GTGATAGATGAATTTGATCAGAATGTACATTTTGTTGAAATTGACATTGAG
genomic: CTGCACCAACATGTGGTCCATGTAGGACCTTGAAGCCAATTCTTAGCAAGgtaccttagt ... cttatggcagGTGATAGATGAATTTGATCAGAATGTACATTTTGTTGAAATTGACATTGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatccattacaatagagttgtgcttaaatttgtgcaaaacgttctcttatggcagGTGATAGATGAATTTGATCAGAATGTACATTTTGTTGAAATTGACATTGAGGAAGATCCCGAAATAGCAGAGGCAGCTGGAATTATGGGTACACCATGTG
cgttctctt CT-rich tract
ttaaatttgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctcattctctatgtgtccattgcactgtagtttgtttcaatatcagatccattacaatagagttgtgcttaaatttgtgcaaaacgttctcttatggcagGTGATAGATGAATTTGATCAGAATGTACATTTTGTTGAAATTGACATTGAGGAAGATCCCGAAATAGCAGAGGCAGCTGGAATTATGGGTACACCATGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- cattctc
- - - - - - - - ccattgc
- - - - - - - - - - - - - - - - - - - - - - - - ccattac
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aatagag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaaac