Sequence
atgc intronic sequence ATGC exonic sequencegtacttccaaacgtccacccctatcttcctggatatagcattttggttcatatttttcttccctttcattaccatgatgcatgtgttttcctcttcaaataatatctattagGTCACCATTGTGAAAAATGAAGAAGGTGGAAACTCCGTATGCACTGTGGTTTTACGAGGAAGTACTGATAGTATATTAGATGACCTTGAAAGAGCAGTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g07460.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G381744_T01 (Zea mays), 3'ss of exon 8
gtacttccaaacgtccacccctatcttcctggatatagcattttggttcatatttttcttccctttcattaccatgatgcatgtgttttcctcttcaaataatatctattagGTCACCATTGTGAAAAATGAAGAAGGTGGAAACTCCGTATGCACTGTGGTTTTACGAGGAAGTACTGATAGTATATTAGATGACCTTGAAAGAGCAGTTG
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------------gtacgttc-tacctgtttttacagaagat--------atatttttatt---tttccttggcaacattcat---tttttttgtttatata----------gGTTACTGTCGTCAAGAACGAAGATGGTGGAAATTCAGTGGCTACTGTTGTCCTGAGAGGCAGTACTGACAGTATACTAGATGATCTTGAAAGAGCTGTTG
upper sequence: Vv08s0007g07460.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G083095_T03 (Zea mays), 3'ss of exon 8
gtacttccaaacgtccacccctatcttcctggatatagcattttggttcatatttttcttccctttcattaccatgatgcatgtgttttcctcttcaaataatatctattagGTCACCATTGTGAAAAATGAAGAAGGTGGAAACTCCGTATGCACTGTGGTTTTACGAGGAAGTACTGATAGTATATTAGATGACCTTGAAAGAGCAGTTG
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------------gtatgttttctactccctt--tgtgcttttacagaagataactttttattcttcc-ttacca----acattcattttgtttttta--ttatat-----agGTTATTGTCATCAAGAACGAAGAAGGTGGAAATTCAGTGGCTACTGTTGTCTTGAGAGGCAGTACTGACAGTATACTAGATGATCTTGAAAGAGCTGTTG
upper sequence: Vv08s0007g07460.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA02G07910.1 (Glycine max), 3'ss of exon 8
------------------------------gtacttccaaacgtccac---ccctatcttcctggatatagcattttggttcatatttttcttccctttcattaccat--gatgcatgtgttttcctcttcaaataatatc----tat-tagGTCACCATTGTGAAAAATGAAGAAGGTGGAAACTCCGTATGCACTGTGGTTTTACGAGGAAGTACTGATAGTATATTAGATGACCTTGAAAGAGCAGTTG
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gtatgttaaagctggattctttcagttctgtcattttctgggttccatgtttcttttttattttagcttattcccttgcttctttttgttgttgtcatttttaagtattgcatgcaattttcttattttttggataatgatatgatatgcagGTGACCATTGTGAAAAATGAAGAGGGTGGAAATTCTGTAGCCACTGTTGTTTTACGAGGAAGTACTGATAGTATACTAGATGATCTTGAAAGAGCAGTGG
upper sequence: Vv08s0007g07460.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA16G26920.1 (Glycine max), 3'ss of exon 8
-----------------------------gtacttccaaacgtccacccctatcttcctggatatagcattttggttcatatttttcttccctttcattaccatg--atgca--tgtgttttcctcttcaaataat-atctatt----agGTCACCATTGTGAAAAATGAAGAAGGTGGAAACTCCGTATGCACTGTGGTTTTACGAGGAAGTACTGATAGTATATTAGATGACCTTGAAAGAGCAGTTG
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gtatgttaaagctggattattttggttctgcctttttatgggttccatgttcctttttttagcttattcccttacttctttttgttcttctcatttctaagtatggcatgcagttttcttttttttttttgataatgatatgatatgcagGTGACCATTGTGAAAAATGAAGAGGGTGGAAATTCTGTGGCTACTGTTGTTTTACGAGGAAGTACTGATAGTATACTAGATGATCTTGAAAGAGCAGTGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110687426|gb|EE064824.1|EE064824EST: ATCTAGGATATGTAGATTCTGTTTCGGTTGAGGAAATTGGCGGTGTTAGG GTCACCATTGTGAAAAATGAAGAAGGTGGAAACTCCGTATGCACTGTGGTT
genomic: ATCTAGGATATGTAGATTCTGTTTCGGTTGAGGAAATTGGTGGTGTTAGGgtacttccaa ... tatctattagGTCACCATTGTGAAAAATGAAGAAGGTGGAAACTCCGTATGCACTGTGGTT
EST:
gi|110701079|gb|EE078296.1|EE078296EST: ATCTAGGATATGTAGATTCTGTTTCGGTTGAGGAAATTGGCGGTGTTANG GTCACCATTGTGAAAAATGAAGAAGGTGGAAACTCCGTATGCACTGTGGTT
genomic: ATCTAGGATATGTAGATTCTGTTTCGGTTGAGGAAATTGGTGGTGTTAGGgtacttccaa ... tatctattagGTCACCATTGTGAAAAATGAAGAAGGTGGAAACTCCGTATGCACTGTGGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttccctttcattaccatgatgcatgtgttttcctcttcaaataatatctattagGTCACCATTGTGAAAAATGAAGAAGGTGGAAACTCCGTATGCACTGTGGTTTTACGAGGAAGTACTGATAGTATATTAGATGACCTTGAAAGAGCAGTTG
ttcaaataatatctat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacttccaaacgtccacccctatcttcctggatatagcattttggttcatatttttcttccctttcattaccatgatgcatgtgttttcctcttcaaataatatctattagGTCACCATTGTGAAAAATGAAGAAGGTGGAAACTCCGTATGCACTGTGGTTTTACGAGGAAGTACTGATAGTATATTAGATGACCTTGAAAGAGCAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG