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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattatatttcctattcttcgtaatatttagtttttgcctttaatatctttaattttatttattttttgaaaaaattactattctggttagATTACTGCTCATGAAGATGTTTTGGAAGTTTCTCAAGCTTGTTTTTGGGAACTCGTGCCTGGTCATGTTGTTGGCTCAGTCACACTTCAG

Basic information

species Vitis vinifera
transcript Vv08s0007g06550.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g06550.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA19G33030.1 (Glycine max), 3'ss of exon 8
--------------gtgattatatttcctattcttcgtaatatttagtttttgcctttaatatctttaattttatttattttttgaaaaaattactattctggttagATTACTGCTCATGAAGATGTTTTGGAAGTTTCTCAAGCTTGTTTTTGGGAACTCGTGCCTGGTCATGTTGTTGGCTCAGTCACACTTCAG
              | | | |||  | | ||| | |  | |  ||||| | |   |||||| |   ||  |  || | |   ||  ||| ||   ||||||| | ||||| ||||||  ||||||||  ||||||| || || ||| ||||||||||| | ||||||||| |||| ||||| ||| | | | | |||
aatcttggggctggggggtgataggtgc-attttgctcact--ttagtctgt-tatttaat-ttgatacgtcaatgtgtcacttctaaatata--tattctgttcagATTTCTGCTCGGGAAGATGTAATGGAAGTCTCCCAGGCTCGTTTTTGGGAATTAGTGCCTGGTTATGTGGTTGGTTCACTTATAATACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcctttaatatctttaattttatttattttttgaaaaaattactattctggttagATTACTGCTCATGAAGATGTTTTGGAAGTTTCTCAAGCTTGTTTTTGGGAACTCGTGCCTGGTCATGTTGTTGGCTCAGTCACACTTCAG
           ctttaat  putative branch site (score: 4)
                                          ctattct  putative PPT
     taatatctttaatttt  TA-rich tract