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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatttcctattccctttttgttttgtcttttcaagtttttcttgctttcaatttatctttattcttcctcttttgtttttcccctcaaatcttcacaatgtgccatgaatcaatgttattggcagaatttaagcttcggtcttgattttacagGGGGTGCTTCAATTTCTCTAACATACATTGCCTCAGAACGGATCATTCCTGG

Basic information

species Vitis vinifera
transcript Vv08s0007g06390.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g06390.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT2G05990.2 (Arabidopsis thaliana), 3'ss of exon 7
gtatatttcctattccctttttgttttgtcttttcaagtttttcttgctttcaatttatctttattcttcctcttttgtttttcccctcaaatcttcacaatgtgccatgaatcaatgttattggcagaatttaagcttcggtcttgattttacagGGGGTGCTTCAATTTCTCTAACATACATTGCCTCAGAACGGATCATTCCTGG
                                                               ||    |   ||| || | || | | |   |||   ||| ||             || ||      ||||     ||  |  ||||||   ||| ||||||||||| ||||| || ||||||||||| ||| | |||||||||||
-------------------------------------------------------------gcatgtaacaaatttcgtatgtctctttattccttgtaaatatgtt-----------ttctt------atttggttctctatgatgattt---agGAGGTGCTTCAATATCTCTTACTTACATTGCCTCTGAAAGAATCATTCCTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgccatgaatcaatgttattggcagaatttaagcttcggtcttgattttacagGGGGTGCTTCAATTTCTCTAACATACATTGCCTCAGAACGGATCATTCCTGG
                                         tcttgat  putative branch site (score: 4)
             aatgttatt  TA-rich tract