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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttaatttctgtctccttctctctcagtcttcataactatgccagatgtataaggcttttaaatttggattgtttttttttgcagCTTTCTGGCTATGTGAAATGCCCACGGCATCGTCTGCCAAG

Basic information

species Vitis vinifera
transcript Vv08s0007g05920.t01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|156736397|gb|EV240511.1|EV240511
EST:     TGATTTTCTTTATTCCTCAAGTTTTAAACTTTCTATTATCACTCCCCCAG                         CTTTCTGGCTATGTGAAATGCCCACGGCATCGTCTGCCAAG
genomic: TGATTTTCTTTATTCCTCAAGTTTTAAACTTTCTATTATCACTCCCCCAGgtttaatttc ... ttttttgcagCTTTCTGGCTATGTGAAATGCCCACGGCATCGTCTGCCAAG
EST: gi|33405215|gb|CF210842.1|CF210842
EST:     TGATTTTCTTTATTCCTCAAGTTTTAAACTTTCTATTATCACTCCCCCAG                         CTTTCTGGCTATGTGAAATGCCCACGGCATCGTCTGCCAAG
genomic: TGATTTTCTTTATTCCTCAAGTTTTAAACTTTCTATTATCACTCCCCCAGgtttaatttc ... ttttttgcagCTTTCTGGCTATGTGAAATGCCCACGGCATCGTCTGCCAAG
EST: gi|33405130|gb|CF210757.1|CF210757
EST:     TGATTTTCTTTATTCCTCAAGTTTTAAACTTTCTATTATCACTCCCCCAG                         CTTTCTGGCTATGTGAAATGCCCACGGCATCGTCTGCCAAG
genomic: TGATTTTCTTTATTCCTCAAGTTTTAAACTTTCTATTATCACTCCCCCAGgtttaatttc ... ttttttgcagCTTTCTGGCTATGTGAAATGCCCACGGCATCGTCTGCCAAG
EST: gi|349825767|gb|FQ421866.1|FQ421866
EST:     TGATTTTCTTTATTCCTCAAGTTTTAAACTTTCTATTATCACTCCCCCAG                         CTTTCTGGCTATGTGAAATGCCCACGGCATCGTCTGCCAAG
genomic: TGATTTTCTTTATTCCTCAAGTTTTAAACTTTCTATTATCACTCCCCCAGgtttaatttc ... ttttttgcagCTTTCTGGCTATGTGAAATGCCCACGGCATCGTCTGCCAAG
EST: gi|22010048|gb|BQ795082.1|BQ795082
EST:     TTTCTTTATTCCTCAAGTTTTAAACTTTCTATTATCACTCCCCCAG                         CTTTCTGGCTATGTGAAATGCCCACGGCATCGTCTGCCAAG
genomic: TTTCTTTATTCCTCAAGTTTTAAACTTTCTATTATCACTCCCCCAGgtttaatttc ... ttttttgcagCTTTCTGGCTATGTGAAATGCCCACGGCATCGTCTGCCAAG
EST: gi|110377471|gb|EC942537.1|EC942537
EST:     TGATTTTCTTTATTCCTCAAGTTTTAAACTTTCTATTATCACTCCCCCAG                         CTTTCTGGCTATGTGAAATGCCCACGGCATCGTCTGCCAAG
genomic: TGATTTTCTTTATTCCTCAAGTTTTAAACTTTCTATTATCACTCCCCCAGgtttaatttc ... ttttttgcagCTTTCTGGCTATGTGAAATGCCCACGGCATCGTCTGCCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcataactatgccagatgtataaggcttttaaatttggattgtttttttttgcagCTTTCTGGCTATGTGAAATGCCCACGGCATCGTCTGCCAAG
 tcataac  putative branch site (score: 2)
                                       ttgtttttttttgc  putative PPT
                          ttttaaatttggattg  TA-rich tract