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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgttgatttgtagtaaacaacttcatactagaaaacagaagaaaaaaaggcactatgaactgatttggatttaatttgctactggtttttcttagTACAATTTCAGCTATCCTCTCAGGCACCATCGGCATCCATTACGGACATGTTTTGATTCATTTTAAG

Basic information

species Vitis vinifera
transcript Vv08s0007g04880.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g04880.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA13G20850.1 (Glycine max), 3'ss of exon 9
----gtgtgttgatttgtagtaaacaacttcatactagaaaacagaagaaaaaaaggcactatgaactgatttggatttaatttgctactggtttttcttagTACAATTTCAGCTATCCTCTCAGGCACCATCGGCATCCATTACGGACATGTTTTGATTCATTTTAAG
     |  |   | |  || || | |  ||  || ||   |            ||      |  |  || ||    | |  |||| | ||  ||||   |||| |  | | |||||||||||| |||||||| |||||||| || || ||||| |||||||| || |||
atgaattagacaactattattagaaagttttttaataatcagtcattcggtctaaactttcaatatatgtttaaattgtcctttgtttct--ttttatctagTTCCGTATTAGCTATCCTCTCTGGCACCATTGGCATCCACTATGGGCATGTCTTGATTCACTTCAAG

upper sequence: Vv08s0007g04880.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA19G36920.1 (Glycine max), 3'ss of exon 9
---gtgtgttgatttgtag---taaacaacttcatactagaaaacagaagaaaaaaaggcactatgaactgatttggatttaatttgctactggtttttcttagTACAATTTCAGCTATCCTCTCAGGCACCATCGGCATCCATTACGGACATGTTTTGATTCATTTTAAG
     |||   |||| ||    | |   |||| ||   || ||| |      |   |   |  | ||| |  ||   |  ||||||  |  |  ||      ||| | || |||||||||||||| ||||| |||||||||||||| || ||  | |||||||| || |||
agttagtgagaatttctaaatttgagttactttat--cagcaaataatctctatttatctatca-gaagtatttaacaaataatttttttttt-ttaaaaccagTTCTATATCAGCTATCCTCTCTGGCACTATCGGCATCCATTATGGGCACATCTTGATTCACTTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaaaaaaggcactatgaactgatttggatttaatttgctactggtttttcttagTACAATTTCAGCTATCCTCTCAGGCACCATCGGCATCCATTACGGACATGTTTTGATTCATTTTAAG
                                             tttttctt  CT-rich tract
                      atttggatttaattt  TA-rich tract