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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatttaaagcctttaaaaccttcttgctttatgagtttcaaaatttgtcatacgggtgagtttcattcttaatttcacttcatccttattttctgtcctcctacccaacagGGTGAAGCTGGTGCGAATGTATTGGTTGGAATTCAAGTCCCAGAAACTGAGATGACTGAGTTCAAAAGACGCGCCGATGCTCTTGGATATGAATATGCAG

Basic information

species Vitis vinifera
transcript Vv08s0007g04310.t01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|83275680|gb|DV939688.1|DV939688
EST:     ATACTTTCAGTCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGGCAG                         GGTGAAGCTGGTGCGAATGTATTGGTTGGAATTCAAGTCCCAGAAAATGAG
genomic: ATACTTTCAGTCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGGCAGgtaagtattt ... tacccaacagGGTGAAGCTGGTGCGAATGTATTGGTTGGAATTCAAGTCCCAGAAACTGAG
EST: gi|110389959|gb|EC954838.1|EC954838
EST:     TTCAGTCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGGCAG                         GGTGAAGCTGGTGCGAATGTATTGGTTGGAATTCAAGTCCCAGAAACTGAG
genomic: TTCAGTCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGGCAGgtaagtattt ... tacccaacagGGTGAAGCTGGTGCGAATGTATTGGTTGGAATTCAAGTCCCAGAAACTGAG
EST: gi|71870786|gb|DT019841.1|DT019841
EST:     ATACTTTCAGTCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGGCAG                         GGTGAAGCTGGTGCGAATGTAT
genomic: ATACTTTCAGTCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGGCAGgtaagtattt ... tacccaacagGGTGAAGCTGGTGCGAATGTAT
EST: gi|32246344|gb|CD712163.1|CD712163
EST:     ATACTTTCAGTCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGGCAG                         GGTGAAGCTGGTGCGAATGTATTGGTTGGAATTCAAGTCCCGGAAACTGAG
genomic: ATACTTTCAGTCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGGCAGgtaagtattt ... tacccaacagGGTGAAGCTGGTGCGAATGTATTGGTTGGAATTCAAGTCCCAGAAACTGAG
EST: gi|71868583|gb|DT017638.1|DT017638
EST:     ATACTTTCAGTCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGGCAG                         GGTGAAGCTGGTGCGAATGTATTGGTTGGAATTCAAGTCCCAGAAACTGAG
genomic: ATACTTTCAGTCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGGCAGgtaagtattt ... tacccaacagGGTGAAGCTGGTGCGAATGTATTGGTTGGAATTCAAGTCCCAGAAACTGAG
EST: gi|110719960|gb|EE095522.1|EE095522
EST:     ATACTTTCAGTCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGGCAG                         GGTGAAGCTGGTGCGAATGTATTGGTTGGAATTCAAGTCCCAGAAACTGAG
genomic: ATACTTTCAGTCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGGCAGgtaagtattt ... tacccaacagGGTGAAGCTGGTGCGAATGTATTGGTTGGAATTCAAGTCCCAGAAACTGAG
EST: gi|352769242|gb|FQ471391.1|FQ471391
EST:     ATACTTTCAGTCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGGCAG                         GGTGAAGCTGGTGCGAATGTATTGGTTGGAATTCAAGTCCCAGAAACTGAG
genomic: ATACTTTCAGTCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGGCAGgtaagtattt ... tacccaacagGGTGAAGCTGGTGCGAATGTATTGGTTGGAATTCAAGTCCCAGAAACTGAG
EST: gi|352782067|gb|FQ469365.1|FQ469365
EST:     ATACTTTCAGTCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGGCAG                         GGTGAAGCTGGTGCGAATGTATTGGTTGGAATTCAAGTCCCAGAAACTGAG
genomic: ATACTTTCAGTCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGGCAGgtaagtattt ... tacccaacagGGTGAAGCTGGTGCGAATGTATTGGTTGGAATTCAAGTCCCAGAAACTGAG
EST: gi|30298377|gb|CB975171.1|CB975171
EST:     ATACTTTCAGTCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGGCAG                         GGTGAAGCTGGTGCGAATGTATTGGT
genomic: ATACTTTCAGTCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGGCAGgtaagtattt ... tacccaacagGGTGAAGCTGGTGCGAATGTATTGGT
EST: gi|71873110|gb|DT022165.1|DT022165
EST:     ATACTTTCAGTCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGGCAG                         GGTGAAGCTGGTGCGAATGTATTGGTTGGAATTCAAGTCCCAGAAACTGAG
genomic: ATACTTTCAGTCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGGCAGgtaagtattt ... tacccaacagGGTGAAGCTGGTGCGAATGTATTGGTTGGAATTCAAGTCCCAGAAACTGAG
EST: gi|352764054|gb|FQ467624.1|FQ467624
EST:     ATACTTTCAGTCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGGCAG                         GGTGAAGCTGGTGCGAATGTATTGGTTGGAATTCAAGTCCCAGAAACTGAG
genomic: ATACTTTCAGTCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGGCAGgtaagtattt ... tacccaacagGGTGAAGCTGGTGCGAATGTATTGGTTGGAATTCAAGTCCCAGAAACTGAG
EST: gi|27584353|gb|CB007048.1|CB007048
EST:     ATACTTTCAGTCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGGCAG                         GGTGAAGCTGGTGCGAATGTATTGGTTGGAATTCAAGTCCCAGAAACTGAG
genomic: ATACTTTCAGTCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGGCAGgtaagtattt ... tacccaacagGGTGAAGCTGGTGCGAATGTATTGGTTGGAATTCAAGTCCCAGAAACTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagtttcattcttaatttcacttcatccttattttctgtcctcctacccaacagGGTGAAGCTGGTGCGAATGTATTGGTTGGAATTCAAGTCCCAGAAACTGAGATGACTGAGTTCAAAAGACGCGCCGATGCTCTTGGATATGAATATGCAG
          tcttaat  putative branch site (score: 3)
                tttcacttcatcctta  CT-rich tract
     ttcattcttaattt  TA-rich tract