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...tcaatctcttggatttgtaatctgtattaagttcagctgtatgtgcatagtaatatttgtttctccaatttgtgaagtttctcgtgttttgtttctacagCATTATGATGGGGATGTGAAGGAACTCTCTCTGGATTTCACAGTTACAGAAGAATCATTAGGCAAACGGCACATTATTGAGCTCAAACCTGGTGGCAAGG
species | Vitis vinifera |
transcript | Vv08s0007g04290.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AACTATCAACTCTTGATCCTGAGCTCTACAGGAATCTTATGTATGTTAAG CATTATGATGGGGATGTGAAGGAACTCTCTCTGGATTTCACAGTTACAGAAEST: gi|110380386|gb|EC945648.1|EC945648
genomic: AACTATCAACTCTTGATCCTGAGCTCTACAGGAATCTTATGTATGTTAAGgtaaaccctc ... gtttctacagCATTATGATGGGGATGTGAAGGAACTCTCTCTGGATTTCACAGTTACAGAA
EST: AACTATCAACTCTTGATCCTGAGCTCTACAGGAATCTTATGTATGTTAAG CATTATGATGGGGATGTGAAGGAACTCTCTCTGGATTTCACAGTTACAGAAEST: gi|110363275|gb|EC926852.1|EC926852
genomic: AACTATCAACTCTTGATCCTGAGCTCTACAGGAATCTTATGTATGTTAAGgtaaaccctc ... gtttctacagCATTATGATGGGGATGTGAAGGAACTCTCTCTGGATTTCACAGTTACAGAA
EST: AACTATCAACTCTTGATCCTGAGCTCTACAGGAATCTTATGTATGTTAAG CATTATGATGGGGATGTGAAGGAACTCTCTCTGGATTTCACAGTTACAGAA
genomic: AACTATCAACTCTTGATCCTGAGCTCTACAGGAATCTTATGTATGTTAAGgtaaaccctc ... gtttctacagCATTATGATGGGGATGTGAAGGAACTCTCTCTGGATTTCACAGTTACAGAA
catagtaatatttgtttctccaatttgtgaagtttctcgtgttttgtttctacagCATTATGATGGGGATGTGAAGGAACTCTCTCTGGATTTCACAGTTACAGAAGAATCATTAGGCAAACGGCACATTATTGAGCTCAAACCTGGTGGCAAGG
ttttgtttct CT-rich tract
taatatttgtttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaatctcttggatttgtaatctgtattaagttcagctgtatgtgcatagtaatatttgtttctccaatttgtgaagtttctcgtgttttgtttctacagCATTATGATGGGGATGTGAAGGAACTCTCTCTGGATTTCACAGTTACAGAAGAATCATTAGGCAAACGGCACATTATTGAGCTCAAACCTGGTGGCAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
-caatctc
- - - - - - - - - - - - - - - -ttcagct
- - - - - - - - - - - - - - - - - - - -tatgtgc