1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtcgtcccaaaataatgagttatacatatctatagctagtttgatgtcttggatagcatttttgaaaacttgaggtcatcactctgatctttgactgcagACTGATGAATTCTTCAAAACAAGTGTTCCTGATGTATATGCTGTGGGAGATGTTGCTACTTTCCCACTGAAATTGTACAATGAAATTAGAAGAGTTGAAC
species | Vitis vinifera |
transcript | Vv08s0007g03610.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTACAACATTATTCAAAGGACAGGTGGAAGAGGAGAAAGGTGGAATTAAG ACTGATGAATTCTTCAAA-CAAGTGTTCCTGATGTATATGCTGTGGGAGATEST: gi|161709350|gb|FC059679.1|FC059679
genomic: TTACAACATTATTCAAAGGACAGGTGGAAGAGGAGAAAGGTGGAATTAAGgttagtagat ... ttgactgcagACTGATGAATTCTTCAAAACAAGTGTTCCTGATGTATATGCTGTGGGAGAT
EST: TTACAACATTATTCAAAGGACAGGTGGAAGAGGAGAAAGGTGGAATTAAG ACTGATGAATTCTTCAAAACAAGTGTACCTGATGTATATGCTGTGGGAGATEST: gi|110373500|gb|EC937742.1|EC937742
genomic: TTACAACATTATTCAAAGGACAGGTGGAAGAGGAGAAAGGTGGAATTAAGgttagtagat ... ttgactgcagACTGATGAATTCTTCAAAACAAGTGTTCCTGATGTATATGCTGTGGGAGAT
EST: TTACAACATTATTCAAAGGACAGGTGGAAGAGGAGAAAGGTGGAATTAAG ACTGATGAATTCTTCAAAACAAGTGTTCCTGATGTATATGCTGTGGGAGATEST: gi|161713126|gb|FC062484.1|FC062484
genomic: TTACAACATTATTCAAAGGACAGGTGGAAGAGGAGAAAGGTGGAATTAAGgttagtagat ... ttgactgcagACTGATGAATTCTTCAAAACAAGTGTTCCTGATGTATATGCTGTGGGAGAT
EST: TTACAACATTATTCAAAGGACAGGTGGAAGAGGAGAAAGGTGGAATTAAG ACTGATGAATTCTTCAAAACAAGTGTTCCTGATGTATATGCTGTGGGAGATEST: gi|33403613|gb|CF209240.1|CF209240
genomic: TTACAACATTATTCAAAGGACAGGTGGAAGAGGAGAAAGGTGGAATTAAGgttagtagat ... ttgactgcagACTGATGAATTCTTCAAAACAAGTGTTCCTGATGTATATGCTGTGGGAGAT
EST: TTACAACATTATTCAAAGGACAGGTGGAAGAGGAGAAAGGTGGAATTAAG ACTGATGAATTCTTCAAAACAAGTGTTCCTGATGTATATGCTGTGGGAGATEST: gi|29784398|gb|CB345068.2|CB345068
genomic: TTACAACATTATTCAAAGGACAGGTGGAAGAGGAGAAAGGTGGAATTAAGgttagtagat ... ttgactgcagACTGATGAATTCTTCAAAACAAGTGTTCCTGATGTATATGCTGTGGGAGAT
EST: TTACAACATTATTCAAAGGACAGGTGGAAGAGGAGAAAGGTGGAATTAAG ACTGATGAATTCTTCAAAACAAGTGTTCCTGATGTATATGCTGTGGGAGATEST: gi|26264446|gb|CA815509.1|CA815509
genomic: TTACAACATTATTCAAAGGACAGGTGGAAGAGGAGAAAGGTGGAATTAAGgttagtagat ... ttgactgcagACTGATGAATTCTTCAAAACAAGTGTTCCTGATGTATATGCTGTGGGAGAT
EST: TTACAACATTATTCAAAGGACAGGTGGAAGAGGAGAAAGGTGGAATTAAG ACTGATGAATTCTTCAAAACAAGTGTTCCTGATGTATATGCTGTGGGAGAT
genomic: TTACAACATTATTCAAAGGACAGGTGGAAGAGGAGAAAGGTGGAATTAAGgttagtagat ... ttgactgcagACTGATGAATTCTTCAAAACAAGTGTTCCTGATGTATATGCTGTGGGAGAT
gtcttggatagcatttttgaaaacttgaggtcatcactctgatctttgactgcagACTGATGAATTCTTCAAAACAAGTGTTCCTGATGTATATGCTGTGGGAGATGTTGCTACTTTCCCACTGAAATTGTACAATGAAATTAGAAGAGTTGAAC
ctttgac putative branch site (score: 4)
tcttt CT-rich tract
atttttgaaaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcgtcccaaaataatgagttatacatatctatagctagtttgatgtcttggatagcatttttgaaaacttgaggtcatcactctgatctttgactgcagACTGATGAATTCTTCAAAACAAGTGTTCCTGATGTATATGCTGTGGGAGATGTTGCTACTTTCCCACTGAAATTGTACAATGAAATTAGAAGAGTTGAAC
- - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - tgtcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catcact