Sequence
atgc intronic sequence ATGC exonic sequencegtactcagtgatccttaacttaaattttctagtatatgtcttactcttacagaagattagttgacacatatttgtgtgatactgcttagAACCGAATCCACATATGGGGCATTTGTCTTGGGCTGATGCCTTTGTCATCACAGCTGATTCAGTGAGTATGTTGAGTGAGGCTTGTAGTACTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g02890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os02g33230.1 (Oryza sativa), 3'ss of exon 7
--------------gtactcagtgatccttaacttaaattttctagtatatgtcttactcttacagaagattagttgacacatatttgtgtgatactgcttagAACCGAATCCACATATGGGGCATTTGTCTTGGGCTGATGCCTTTGTCATCACAGCTGATTCAGTGAGTATGTTGAGTGAGGCTTGTAGTACTGG
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gtagatgaaatataacactaagttattcatgatgtaatatatttattatgcatgttg---ttacatttg-taagttgtaacaagttgattttatttt-tgcagAACCTAACCCGCACATGGGGCATCTTGCATGGGCTGATGCTTTTGTTGTAACAGCTGATTCTATAAGTATGTTAAGTGAGGCTTGTAGCACAGG
upper sequence: Vv08s0007g02890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os04g33770.1 (Oryza sativa), 3'ss of exon 7
---gtactcagtgatccttaacttaaattttctagtatatgtcttactct-tacagaagattagttgacacatatttgtgtgatactgcttagAACCGAATCCACATATGGGGCATTTGTCTTGGGCTGATGCCTTTGTCATCACAGCTGATTCAGTGAGTATGTTGAGTGAGGCTTGTAGTACTGG
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gtagttgtcaaaagcctaaaatgagacatgtctgatgtactcatctttatgtgctctacgaaagttttctcagccagttttcttgatgc--agGACCCAACCCACACCTTGGGCATCTTGCATGGGCTGATGCTTTTGTCATAACAGCAGACTCAATTAGTATGCTAAGTGAGGCATGTAGCACTGG
upper sequence: Vv08s0007g02890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA03G35630.1 (Glycine max), 3'ss of exon 9
gtactcagtgatccttaacttaaattttctagtatatgtcttactcttacagaag-attagttgacacatatttgtgtgatactgcttagAACCGAATCCACATATGGGGCATTTGTCTTGGGCTGATGCCTTTGTCATCACAGCTGATTCAGTGAGTATGTTGAGTGAGGCTTGTAGTACTGG
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gtacttagtttccatattcttaagagaagaaatctatacttatttttcccagtaccagagaatactaggtgtatttttggttacatttagGTTCAAATCCACATATGGGACATCTGGCCTGGGCTGATGCCTTTGTTATCACTGCTGATTCAGTTAGTATGTTGAGTGAGGCCTGCAGTACTGG
upper sequence: Vv08s0007g02890.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA19G38270.1 (Glycine max), 3'ss of exon 6
gtactcagtgatccttaacttaaattttctagtatatgtcttactctta----cagaagattagttgac---acatatttgtgtgatactgcttagAACCGAATCCACATATGGGGCATTTGTCTTGGGCTGATGCCTTTGTCATCACAGCTGATTCAGTGAGTATGTTGAGTGAGGCTTGTAGTACTGG
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gtacttagtttccatattcttaagagaagaaatatacttatcagtcccagttccagaggcagagattacctagcattttttttttgttacatttagGTTCAAATCCACATATGGGACATCTGGCCTGGGCTGATGCCTTTGTTATCACTGCTGATTCAGTTAGCATGTTGAGTGAGGCCTGCAGTACTGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatgtcttactcttacagaagattagttgacacatatttgtgtgatactgcttagAACCGAATCCACATATGGGGCATTTGTCTTGGGCTGATGCCTTTGTCATCACAGCTGATTCAGTGAGTATGTTGAGTGAGGCTTGTAGTACTGG
acatattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtactcagtgatccttaacttaaattttctagtatatgtcttactcttacagaagattagttgacacatatttgtgtgatactgcttagAACCGAATCCACATATGGGGCATTTGTCTTGGGCTGATGCCTTTGTCATCACAGCTGATTCAGTGAGTATGTTGAGTGAGGCTTGTAGTACTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT