Sequence
atgc intronic sequence ATGC exonic sequence...cccttgtatgtacttatatacacatattttataattcacatgatgcattaaatcattcagcaatttattatttttcccaattttttttgtcatgttgcagAATGCTGCGGAGAAGCCCCCTTTCTTCCTTCCAAGCTGGACGGCAATGTATGTGGTCAACACCTTTGTGGTGGTGTGGGTGCTAGTGGTTGGGTTTGGGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA03G09140.1 (Glycine max), 3'ss of exon 7
cccttgtatgtacttatatacacatatttt---ataattcacatgatgcattaaatcattcagcaatttattatttttcccaattttttttgtcatgttgcagAATGCTGCGGAGAAGCCCCCTTTCTTCCTTCCAAGCTGGACGGCAATGTATGTGGTCAACACCTTTGTGGTGGTGTGGGTGCTAGTGGTTGGGTTTGGGT
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---ttaaatctccttttttgcggatttttgtgagtaatacatcaacagtgtagggacatcctaagttatctaaggtttttattttatttttctcattttgcagAATGCTGCAGAGAAGCCTCCTTTCTTCATGCCAAGCTGGACTGCAATGTATGTCTTCAATGCATTCATTATTGGATGGGTTTTGGTGGTTGGATTTGGGC
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA03G09100.1 (Glycine max), 3'ss of exon 8
cccttgtatgtacttatatacacatattttataattcacatgat----gcattaaatcattc--agcaatttattatttttcccaattttttttgtcatgttgcagAATGCTGCGGAGAAGCCCCCTTTCTTCCTTCCAAGCTGGACGGCAATGTATGTGGTCAACACCTTTGTGGTGGTGTGGGTGCTAGTGGTTGGGTTTGGGT
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---ttgctggtccctttctttgggatttttgtgagtaatacaacagtagtgtaggggcatcctaagtgatataaagttttttt---ttttccttcaaattttgcagAATGCTGCAGAGAAGCCTCCTTTCTTCATGCCAAGCTGGACTGCAATGTATGTCTTCAATGCATTCATTGTGGTATGGGTTTTTGTAGTTGGATTTGGGC
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA18G42640.1 (Glycine max), 3'ss of exon 8
cccttgtatgtacttatatacacatattttataattcacatgatgcattaaatcattcagcaatttattatttttcccaattt-tttttgtcatgttgcagAATGCTGCGGAGAAGCCCCCTTTCTTCCTTCCAAGCTGGACGGCAATGTATGTGGTCAACACCTTTGTGGTGGTGTGGGTGCTAGTGGTTGGGTTTGGGT
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tgttcctattctgggaattttggaaataatgcaatggaagt-ataagtaggggcatccaagtactcctcagtaatgtgacttagtttactttgttttgtagAATGCTGCTGAGAAGCCTCCTTTCTTTATGCCAAGCTGGACTGCAATGTATGTCTTCAATGCATTCATTGTGGTGTGGGTTTTGGTGGTTGGGTTTGGGT
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA07G17810.2 (Glycine max), 3'ss of exon 9
cccttgtatgtacttatatacacatattttataattcacatgatgcattaaatcattcagcaatttattatttttcccaattttttttgtcatgtt---gcagAATGCTGCGGAGAAGCCCCCTTTCTTCCTTCCAAGCTGGACGGCAATGTATGTGGTCAACACCTTTGTGGTGGTGTGGGTGCTAGTGGTTGGGTTTGGGT
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--ttcctattttgggaattttgggaataatgcaatggacgt-ataagtagggttctccacagtactcctcaataatgtgacattatttgctttgttttctcagAATGCTGCTGAGAAGCCTCCTTTCTTTATGCCAAGCTGGACTGCAATGTATGTCTTTAATGCATTCATTGTGGTGTGGGTTTTGGTGGTTGGGTTTGGGT
upper sequence: Vv08s0007g02030.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA1403S00200.1 (Glycine max), 3'ss of exon 2
cccttgtatgtacttatatacacatattttataattcacatgatgcattaaatcattcagcaatttattattttt----cccaattttttttgtc--atgttgcagAATGCTGCGGAGAAGCCCCCTTTCTTCCTTCCAAGCTGGACGGCAATGTATGTGGTCAACACCTTTGTGGTGGTGTGGGTGCTAGTGGTTGGGTTTGGGT
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------ctggtccctttctttgggaattttgtgattaatacaatagtagtagtgtaggggcatcctaagctatctaaagtgtgttttttttcgtctaattttgcagAATGCTGCAGAGAGGCCTCCTTTCTTCATGCCAAGCTGGACTGTAATGTATGTCTTCAATGCATTCATTGTGGTATGGGTTTTTGTAGTTGGATTTGGGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cattaaatcattcagcaatttattatttttcccaattttttttgtcatgttgcagAATGCTGCGGAGAAGCCCCCTTTCTTCCTTCCAAGCTGGACGGCAATGTATGTGGTCAACACCTTTGTGGTGGTGTGGGTGCTAGTGGTTGGGTTTGGGT
tttttcccaatttttt CT-rich tract
aatttattatttttcc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cccttgtatgtacttatatacacatattttataattcacatgatgcattaaatcattcagcaatttattatttttcccaattttttttgtcatgttgcagAATGCTGCGGAGAAGCCCCCTTTCTTCCTTCCAAGCTGGACGGCAATGTATGTGGTCAACACCTTTGTGGTGGTGTGGGTGCTAGTGGTTGGGTTTGGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
cccttgt
- - - - - - - - -atacaca
- - - - - - - - - - - - - - - - - -tcacatg
- - - - - - - - - - - - - - - - - - - - - - - - -aaatcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tcagcaa