Sequence
atgc intronic sequence ATGC exonic sequencegtgggtcccttttctcatcccctctaactttcattgccttgggattctactttacatgctatgtaccttttttttttttcttttttttttttctaaacagCAATGGTGAACCTGAGAAACCATTGGTAATCCATGTTGGAAGACTTGGGGTAGAGAAGAGCTTGGATTTCCTGAAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA18G42540.1 (Glycine max), 3'ss of exon 8
gtgggtcccttttctcatcccctctaactttcattgccttgggattctactttacatgctatgtaccttttttttttttcttttttttttttctaaacagCAATGGTGAACCTGAGAAACCATTGGTAATCCATGTTGGAAGACTTGGGGTAGAGAAGAGCTTGGATTTCCTGAAAAG
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gtgtggaccttttctcatt--------------ttgtcatataatcaagttttggcaataatgt-catttcatcatgttcttaaacatttgtc-atacagCAATGATGAACCTGACAAACCCTTGATAATTCATGTTGGACGGCTTGGAGTAGAGAAGAGTTTAGATTTTCTGAAAAG
upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA07G17680.1 (Glycine max), 3'ss of exon 7
gtgggtcccttttctcatcccctctaactttcattgccttgggattctactttacatgctatgtaccttttttttttttcttttttttttttctaaacagCAATGGTGAACCTGAGAAACCATTGGTAATCCATGTTGGAAGACTTGGGGTAGAGAAGAGCTTGGATTTCCTGAAAAG
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gtatggaccttttctcattttttcatatgctca---------------agttttggtaataatgacatttcatcttattcttaaacatttgtc-atacagCAATGGTGAACCTGACAAACCCTTGATTGTTCATGTTGGACGGCTTGGAGTAGAGAAGAGTTTAGATTTTCTGAAAAG
upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA03G14200.1 (Glycine max), 3'ss of exon 8
gtgggtcccttttctcatcccctctaactttcattgccttgggattctactttacatgctatgtaccttttttttttttcttttttttttttctaaacagCAATGGTGAACCTGAGAAACCATTGGTAATCCATGTTGGAAGACTTGGGGTAGAGAAGAGCTTGGATTTCCTGAAAAG
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----------gtgcagaccatttgccattttcatgtgcccaaggtttgatatttaatggggt------ttcaatttattcttaatcttgtgtc-atacagCAATGGTGAACCTGAGAAGCCCTTGATAGTTCATGTTGGACGGCTTGGAGTTGAGAAGAGTTTAGATTTTCTCAAAAG
upper sequence: Vv08s0007g01940.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA01G27840.1 (Glycine max), 3'ss of exon 8
gtgggtcccttttctcatcccctctaactttcattgccttgggattctactttacatgctatgtaccttttttttttttcttttttttttttctaaacagCAATGGTGAACCTGAGAAACCATTGGTAATCCATGTTGGAAGACTTGGGGTAGAGAAGAGCTTGGATTTCCTGAAAAG
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----------------gtgcagaccattttccattttcatgtg--cccaatg---atgtttaatgggttttcaacttattcttaatcttgtgtcatatagCAATGGTGAACCTGAGAAGCCCTTGATAGTTCATGTTGGACGGCTTGGAGTTGAGAAGAGTTTAGATTTTCTCAAAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110423954|gb|EC990307.1|EC990307EST: GAAAGTTTCCATCCTCGTTACTATTCTCACGAAATGCGTTTAAGACTAAG CAATGGTGAACCTGAGAAACCATTGGTAATCCATGTTGGAAGACTTGGGGT
genomic: GAAAGTTTCCATCCTCGTTACTATTCTCACGAAATGCGTTTAAGACTAAGgtgggtccct ... ttctaaacagCAATGGTGAACCTGAGAAACCATTGGTAATCCATGTTGGAAGACTTGGGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctactttacatgctatgtaccttttttttttttcttttttttttttctaaacagCAATGGTGAACCTGAGAAACCATTGGTAATCCATGTTGGAAGACTTGGGGTAGAGAAGAGCTTGGATTTCCTGAAAAG
tgctatgtaccttttt CT-rich tract
tatgtacctttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgggtcccttttctcatcccctctaactttcattgccttgggattctactttacatgctatgtaccttttttttttttcttttttttttttctaaacagCAATGGTGAACCTGAGAAACCATTGGTAATCCATGTTGGAAGACTTGGGGTAGAGAAGAGCTTGGATTTCCTGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT