1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gggggcatcggctatgctaccacttagaactgagttgttaagaaaaggagtttgattttctcgtgtccccatgctcattgtttctctcttcccatgacagGCTAAGAAGTTCGTCCAACGCATAGAGTCGTCATGAGTTTTAAAGAGAGCTGACAATCAAGGTGGTAGCGAATAAATTTTGCATGGGATTACATCGATAC
species | Vitis vinifera |
transcript | Vv08s0007g01700.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGGACGGCTGGGATCTTGGAACGTCATCATGTTTCTGACCTTGGAACAG GCTAAGAAGTTCGTCCAACGCATAGAGTCGTCATGAGTTTTAAAGAGAGCT
genomic: TTGGACGGCTGGGATCTTGGAACGTCATCATGTTTCTGACCTTGGAACAGgtacagtttc ... cccatgacagGCTAAGAAGTTCGTCCAACGCATAGAGTCGTCATGAGTTTTAAAGAGAGCT
aggagtttgattttctcgtgtccccatgctcattgtttctctcttcccatgacagGCTAAGAAGTTCGTCCAACGCATAGAGTCGTCATGAGTTTTAAAGAGAGCTGACAATCAAGGTGGTAGCGAATAAATTTTGCATGGGATTACATCGATAC
gtttgat putative branch site (score: 5)
tccccatgctcattgt putative PPT
tttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggggcatcggctatgctaccacttagaactgagttgttaagaaaaggagtttgattttctcgtgtccccatgctcattgtttctctcttcccatgacagGCTAAGAAGTTCGTCCAACGCATAGAGTCGTCATGAGTTTTAAAGAGAGCTGACAATCAAGGTGGTAGCGAATAAATTTTGCATGGGATTACATCGATAC
gggggca
- - - - - - - - ctaccac
- - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccccat