1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aggtctctgcttccctctggggtttttcaaatattgggtcgacatcaaccaaacttacaaaacagttgggaggaggccatccatgtttgcaaatattcagATGGAAGTTGGAACAACCGGCAATATCATGATGAGAGGAATCGGAAGTGGTAGAGGACATAGAGACTTACAAGGAAAGTTACAAAACTAA
species | Vitis vinifera |
transcript | Vv08s0007g01390.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
caaccaaacttacaaaacagttgggaggaggccatccatgtttgcaaatattcagATGGAAGTTGGAACAACCGGCAATATCATGATGAGAGGAATCGGAAGTGGTAGAGGACATAGAGACTTACAAGGAAAGTTACAAAACTAA
aacttac putative branch site (score: 2)
aaatattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggtctctgcttccctctggggtttttcaaatattgggtcgacatcaaccaaacttacaaaacagttgggaggaggccatccatgtttgcaaatattcagATGGAAGTTGGAACAACCGGCAATATCATGATGAGAGGAATCGGAAGTGGTAGAGGACATAGAGACTTACAAGGAAAGTTACAAAACTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- -tctctgc
- - - - - ttccctc
- - - - - - - - - ggggttt
- - - - - - - - - - - - - -caaatat
- - - - - - - - - - - - - - - - - - - - - - tcaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgc