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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaggttttcttctcattgctgatgtctgaagtgtttcctcttttgctgctcagccattgtctaatgtagaatcacttattcatttgaatgtcagTGTTTCTTTCCTCAAGAATTTATCAAGAACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAG

Basic information

species Vitis vinifera
transcript Vv08s0007g00290.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g00290.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G09410.3 (Arabidopsis thaliana), 3'ss of exon 8
gcaggttttct-tctcattgctgatgtctgaagtgtttcctctt----ttgctgctcagcc-attgt--ctaatgtagaatcacttattcatttgaatgt-cagTGTTTCTTTCCTCAAGAATTTATCAAGAACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAG
| ||||||| | ||| | |     ||| |      | | ||  |    | | |  | | |  ||| |   |  | |   |  |||| ||  ||  ||| | |||||| | ||||||||||||||  | || ||||||| ||| || || || |||||||| ||||| || ||||||||||||
gtaggttttgtctcttactttgattgtattttccatctactgataaaatcgttctttacctgattatgattggtatttgag-actttttttttaaaatttgcagTGTATGTTTCCTCAAGAATTCCTGAAAAACATAAGAACTCCGGTATTTCTTGTCAATCCAGCCTACGATTTTTGGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32248985|gb|CD714804.1|CD714804
EST:     TAGCAAGCAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAG                         TGTTTCTTTCCTCAAGAATTTATCAAGAACATAAAAACCCCAGTTTTCCTT
genomic: TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAGgcaggttttc ... tgaatgtcagTGTTTCTTTCCTCAAGAATTTATCAAGAACATAAAAACCCCAGTTTTCCTT
EST: gi|32267540|gb|CD716503.1|CD716503
EST:     TAGCAAGCAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAG                         TGTTTCTTTCCTCAAGAATTTATCAAGAACATAAAAACCCCAGTTTTCCTT
genomic: TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAGgcaggttttc ... tgaatgtcagTGTTTCTTTCCTCAAGAATTTATCAAGAACATAAAAACCCCAGTTTTCCTT
EST: gi|30321805|gb|CD005067.1|CD005067
EST:     TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAG                         G
genomic: TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAGgcaggttttc ... tgaatgtcag-
EST: gi|30321805|gb|CD005067.1|CD005067
EST:     TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAG                         G
genomic: TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAGgcaggttttc ... tgaatgtcag-
EST: gi|30321805|gb|CD005067.1|CD005067
EST:     TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAG                         G
genomic: TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAGgcaggttttc ... tgaatgtcag-
EST: gi|30321805|gb|CD005067.1|CD005067
EST:     TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAG                         G
genomic: TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAGgcaggttttc ... tgaatgtcag-
EST: gi|30321805|gb|CD005067.1|CD005067
EST:     TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAG                         G
genomic: TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAGgcaggttttc ... tgaatgtcag-
EST: gi|27581176|gb|CB003871.1|CB003871
EST:     TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAG                         G
genomic: TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAGgcaggttttc ... tgaatgtcag-
EST: gi|27581176|gb|CB003871.1|CB003871
EST:     TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAG                         G
genomic: TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAGgcaggttttc ... tgaatgtcag-
EST: gi|27581176|gb|CB003871.1|CB003871
EST:     TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAG                         G
genomic: TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAGgcaggttttc ... tgaatgtcag-
EST: gi|27581176|gb|CB003871.1|CB003871
EST:     TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAG                         G
genomic: TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAGgcaggttttc ... tgaatgtcag-
EST: gi|27581176|gb|CB003871.1|CB003871
EST:     TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAG                         G
genomic: TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAGgcaggttttc ... tgaatgtcag-
EST: gi|27581112|gb|CB003807.1|CB003807
EST:     TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAG                         G
genomic: TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAGgcaggttttc ... tgaatgtcag-
EST: gi|27581112|gb|CB003807.1|CB003807
EST:     TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAG                         G
genomic: TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAGgcaggttttc ... tgaatgtcag-
EST: gi|27581112|gb|CB003807.1|CB003807
EST:     TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAG                         G
genomic: TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAGgcaggttttc ... tgaatgtcag-
EST: gi|27581112|gb|CB003807.1|CB003807
EST:     TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAG                         G
genomic: TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAGgcaggttttc ... tgaatgtcag-
EST: gi|27581112|gb|CB003807.1|CB003807
EST:     TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAG                         G
genomic: TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAGgcaggttttc ... tgaatgtcag-
EST: gi|27579922|gb|CB002617.1|CB002617
EST:     TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAGGCAG                      
genomic: TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCAT-CC---CAGgcaggttttc ... tgaatgt
EST: gi|32269551|gb|CD718710.1|CD718710
EST:     TAGCAAGCAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAG                         TGTTTCTTTCCTCAAGAATTTATCAAGAACATAAAAACCCCAGTTTTCCTT
genomic: TAGCAAACAGTTTGGATAAGGATTGTGTTGGAAGAATGGAACCATCCCAGgcaggttttc ... tgaatgtcagTGTTTCTTTCCTCAAGAATTTATCAAGAACATAAAAACCCCAGTTTTCCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttgctgctcagccattgtctaatgtagaatcacttattcatttgaatgtcagTGTTTCTTTCCTCAAGAATTTATCAAGAACATAAAAACCCCAGTTTTCCTTGTCAACCCAGCTTATGATTTTTGGCAG
                   gtctaat  putative branch site (score: 3)
                                       ttcattt  putative PPT
                                    ttattcatttgaat  TA-rich tract