Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcgttagctttattttttgtcccccacctctctactgtctttgtatcatattttaagtaaatggtatgagttctgccataaaaatgatttgatgcagTGAACGAGCTTCTGAAACACATAGTGGTGGTCAAAAGCTGAGAGATGGAGCCAATATTAATCGTTCGCTTCTTGCTTTGGCAAACTGCATCAATGCTCTG

Basic information

species Vitis vinifera
transcript Vv07s0205g00140.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0205g00140.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os03g56260.1 (Oryza sativa), 3'ss of exon 8
gtaagttcgttagctttattttttgtcccccacctctctactgtctttgtatcatattttaa---gtaaatggtatgagttctgccataaaaatgatttgatg-cagTGAACGAGCTTCTGAAACACATAGTGGTGGTCAAAAGCTGAGAGATGGAGCCAATATTAATCGTTCGCTTCTTGCTTTGGCAAACTGCATCAATGCTCTG
               | ||    |    || ||  || |   |  | | | ||  |||| |    |  ||     | || | |     ||   | || | ||  ||||||  | || ||||||||| | |    ||| |||||||| |||||||||||||| ||||| ||||| ||||| ||  | || |||||||||||||| || 
--------------gtaatacactaatacctactcctttttggattgtttttctcatttcaccctgctaagaaagtaagctataaagcaacgcttatattataacagTGAGAGGGCCTCTGAAACAAACAACTTTGGGCAAAAGCTTAGAGATGGAGCCAACATTAACCGTTCACTTCTAGCGCTAGCGAACTGCATCAATGCCCTT

upper sequence: Vv07s0205g00140.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM5G837018_T01 (Zea mays), 3'ss of exon 8
gtaagttcgttagctttattttttgtcccccacctctctactgtctttgtatcatattttaagtaaatggtatgagttctgccataaaaatgatttgatgcagTGAACGAGCTTCTGAAACACATAGTGGTGGTCAAAAGCTGAGAGATGGAGCCAATATTAATCGTTCGCTTCTTGCTTTGGCAAACTGCATCAATGCTCTG
      |  |  |   | | |||  |  |    ||   || |   | || |  | |      |||||| |||   ||  ||  | |    |  | ||| |||||||  | || ||||||||| | |     ||||||||||| |||||||||||||| || || || || || || || || ||||||||||||||||| || 
-----gttataggaactctatttcattgctagtctaattaatacttgtggaaaaaacaagttgtaaattgtaaatgtaatgttaca----ttctgtga-gcagTGAGAGGGCCTCTGAAACAAACAACTTCGGTCAAAAGCTTAGAGATGGAGCCAACATCAACCGATCACTCCTAGCATTAGCAAACTGCATCAATGCCCTA

upper sequence: Vv07s0205g00140.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: PP1S7_82V6.1 (Physcomitrella patens), 3'ss of exon 8
gtaagttcgttagctttattttttgtcccccacctctctactgtctttgtatcatattttaagtaaatggtatgagttctgcc--ataaaaatgatttgatgcagTGAACGAGCTTCTGAAACACATAGTGGTGGTCAAAAGCTGAGAGATGGAGCCAATATTAATCGTTCGCTTCTTGCTTTGGCAAACTGCATCAATGCTCTG
     |    || | | | | ||| ||   |   | |  |   | ||| |  || | |      ||    | |  | | |  |  | | |  |  |||| ||||||||| ||||||| || ||  ||| || ||| ||||||||||| || || || ||||| || ||||| ||||||||||| || ||||||||||||||||| 
-----tctcatatcctcagtatttttcggtcttttgtgcatattgtttctcccacagtacttacaatatatttttgctgtagctgacacatttattttggtgcagTGAAAGAGCTTCAGAGACGAATAATGCTGGACAAAAGCTGAGGGACGGTGCGAATATCAACCGTTCACTTCTTGCTTTAGCTAACTGCATCAATGCTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatcatattttaagtaaatggtatgagttctgccataaaaatgatttgatgcagTGAACGAGCTTCTGAAACACATAGTGGTGGTCAAAAGCTGAGAGATGGAGCCAATATTAATCGTTCGCTTCTTGCTTTGGCAAACTGCATCAATGCTCTG
                                            atttgat  putative branch site (score: 5)
     atattttaagtaaat  TA-rich tract