1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaataacataaggacatccattacatttaaaagaatcctgaatgctattatttttggcttattaaagcacaaatctgcttatttgttgtggtatgtccagATTCATATTTTGCCGATGTGTGCTGTCTCTCTTCTGCCCTCCAGAAGATAGTGAACAATATCTGCCCCTTTGCTTGCCCCAGCTTCCCAGTTCTGTCTCT
species | Vitis vinifera |
transcript | Vv07s0191g00140.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTCTGGGCTCAAGTTTTATCGGATCCATTTCTGAGGCGACTTATTCTTAG ATTCATATTTGGCCGATGTGTGCTGTCTCTCTTCTGCCCTCCAGAAGATAGEST: gi|161709160|gb|FC061370.1|FC061370
genomic: GTCTGGGCTCAAGTTTTATCGGATCCATTTCTGAGGCGACTTATTCTTAGgtaatctttc ... gtatgtccagATTCATATTTTGCCGATGTGTGCTGTCTCTCTTCTGCCCTCCAGAAGATAG
EST: GTCTGGGCTCAAGTATTATCGGATCCATTTCTGAGGCGACTTATTCTTAG ATTCATATTTTGCCGATGTGTGCTGTCTCTCTTCTGCCCTCCAGAAGATAG
genomic: GTCTGGGCTCAAGTTTTATCGGATCCATTTCTGAGGCGACTTATTCTTAGgtaatctttc ... gtatgtccagATTCATATTTTGCCGATGTGTGCTGTCTCTCTTCTGCCCTCCAGAAGATAG
tattatttttggcttattaaagcacaaatctgcttatttgttgtggtatgtccagATTCATATTTTGCCGATGTGTGCTGTCTCTCTTCTGCCCTCCAGAAGATAGTGAACAATATCTGCCCCTTTGCTTGCCCCAGCTTCCCAGTTCTGTCTCT
ttattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaataacataaggacatccattacatttaaaagaatcctgaatgctattatttttggcttattaaagcacaaatctgcttatttgttgtggtatgtccagATTCATATTTTGCCGATGTGTGCTGTCTCTCTTCTGCCCTCCAGAAGATAGTGAACAATATCTGCCCCTTTGCTTGCCCCAGCTTCCCAGTTCTGTCTCT
aaataac
- - - - - - -acatcca
- - - - - - - - - - - - - - aaaagaa
- - - - - - - - - - - - - - - - - - - -gaatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtg