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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcttcaagccagttttattttctttttttgcttatgtatattctctggtttgttgtaataaatctttctaaaagtgaatgcttttaataaagctgatctttttcttgtttttgaatggatattgcagGGACAAGATGTTGCCTTTGAACCTGCTAAGCTTCTGTGGCTTATCCAACGTGATTTTCTAC

Basic information

species Vitis vinifera
transcript Vv07s0141g00110.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os03g58240.1 (Oryza sativa), 3'ss of exon 8
gtaatcttcaagccagttttattttctttttttgcttatgtatattctctggtttgttgtaataaatctttctaaaagtgaatgcttttaataaagctgatctttttcttgtttttgaatggatattgcagGGACAAGATGTTGCCTTTGAACCTGCTAAGCTTCTGTGGCTTATCCAACGTGATTTTCTAC
                                |  |  |  || | |   | | | |    |||| |       |||  |||| ||     | |||||| |   |  | | | ||||  |     || ||||| ||||||||||| |||||||| || |||||||| |||||||||||  | ||||| || |
-------------------------------gtaatgttccatctccatggatctatctggataattgaaatagaaatagaattct----gtgaagctg-ttaatgacatatgtttgttt-----tttcagGGGCAAGATGTTGCTTTTGAACCAGCAAAGCTTCTTTGGCTTATCCAGAGGGATTTCCTGC

upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G305254_T04 (Zea mays), 3'ss of exon 7
--------------------------------------------------gtaatcttcaagccagttttattttctttttttgct-tatgtatattctctggtttgttgtaataaatc--tttctaaaagtg-aatgcttttaataaagctgatctttttcttgtttttg--aatggatat-tgcagGGACAAGATGTTGCCTTTGAACCTGCTAAGCTTCTGTGGCTTATCCAACGTGATTTTCTAC
                                                  | ||   | |      |  | ||||  || | ||||  |  | | |   | |  |    ||||||   |  ||||   || |  || ||| | ||  | |   ||   | | || ||  ||  ||||  ||| | ||||| ||||||||||| ||||| || || |||||||| |||||||||||  | ||||| || |
tttgctcatttcttttgtgcctttctgtttccatataatcattttgatctggaacactaacatttatcctttttttgttatatgctgcacttttgtgagcagagtgaaggtaatactccagtttcatgaattataaggctgtaaaataggaacatggatatttttttgatggaaatgcttatCTTCAGGGGCAAGATGTTGCTTTTGAGCCAGCAAAGCTTCTCTGGCTTATCCAGAGGGATTTCCTCC

upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G321413_T01 (Zea mays), 3'ss of exon 1
gtaatcttcaagccagttttattttctttttttgcttatgtatattctctggtt--tgttgtaataaatctttctaaaagtgaatgcttttaataaagctgatctttttcttgtttttgaatggatattgcagGGACAAGATGTTGCCTTTGAACCTGCTAAGCTTCTGTGGCTTATCCAACGTGATTTTCTAC
                                || || ||   |   |   | |     || | |         || |||       |   || |  | |  | ||||  | |   |    | | |  | ||||| ||||||||||| ||||| || || |||||||| |||||||||||  | ||||| || |
-------------------------------atgtttgtgagcagagtgaaggtaacactgcatttgcgtgacttataagcctgcaataggaacatggatagttttttaatggaaat--gcttgtttcttcagGGGCAAGATGTTGCTTTTGAGCCAGCAAAGCTTCTCTGGCTTATCCAGAGGGATTTCCTCC

upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G305254_T07 (Zea mays), 3'ss of exon 6
---------------------------------------------------gtaatcttcaagccagttttattttctttttttgct-tatgtatattctctggtttgttgtaataaatc--tttctaaaagtg-aatgcttttaataaagctgatctttttcttgtttttg--aatggatat-tgcagGGACAAGATGTTGCCTTTGAACCTGCTAAGCTTCTGTGGCTTATCCAACGTGATTTTCTAC
                                                   | ||   | |      |  | ||||  || | ||||  |  | | |   | |  |    ||||||   |  ||||   || |  || ||| | ||  | |   ||   | | || ||  ||  ||||  ||| | ||||| ||||||||||| ||||| || || |||||||| |||||||||||  | ||||| || |
gtttgctcatttcttttgtgcctttctgtttccatataatcattttgatctggaacactaacatttatcctttttttgttatatgctgcacttttgtgagcagagtgaaggtaatactccagtttcatgaattataaggctgtaaaataggaacatggatatttttttgatggaaatgcttaTCTTCAGGGGCAAGATGTTGCTTTTGAGCCAGCAAAGCTTCTCTGGCTTATCCAGAGGGATTTCCTCC

upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G019361_T01 (Zea mays), 3'ss of exon 7
--------------------------------gtaatcttcaagccagttttattttctttttttgct-tatg-tatattctctggtttgttgtaataaatctttctaaaagtgaatg-cttttaa---taaagctgatctttttcttgtttttgaatggatat---------tgcagGGACAAGATGTTGCCTTTGAACCTGCTAAGCTTCTGTGGCTTATCCAACGTGATTTTCTAC
                                 | ||||  ||  |     | | ||||||||||| | |||| |  ||  |   |      || | |  |    ||  |  ||  || ||| |||   |  |   |     |   | |||||| |||||| ||         | ||||| ||||||||||| ||||| || || |||||||| |||||||||||  | ||||| || |
ttttcgtgcctttctgtttggttataatcattttgatctggaaaactaacatttattctttttttgttatatgctgcatgtttgtgagcagagtga-aggtaacactgcatttgcgtgacttataagcctgcaataggaacatggatagttttttaatggaaatgcttgtttcttcagGGGCAAGATGTTGCTTTTGAGCCAGCAAAGCTTCTCTGGCTTATCCAGAGGGATTTCCTCC

upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G019361_T02 (Zea mays), 3'ss of exon 7
-------------------------------------gtaatcttcaagccagttttattttctttttttgct-tatg-tatattctctggtttgttgtaataaatctttctaaaagtgaatg-cttttaa---taaagctgatctttttcttgtttttgaatggatat---------tgcagGGACAAGATGTTGCCTTTGAACCTGCTAAGCTTCTGTGGCTTATCCAACGTGATTTTCTAC
                                      | ||||  ||  |     | | ||||||||||| | |||| |  ||  |   |      || | |  |    ||  |  ||  || ||| |||   |  |   |     |   | |||||| |||||| ||         | ||||| ||||||||||| ||||| || || |||||||| |||||||||||  | ||||| || |
ttcatttttcgtgcctttctgtttggttataatcattttgatctggaaaactaacatttattctttttttgttatatgctgcatgtttgtgagcagagtga-aggtaacactgcatttgcgtgacttataagcctgcaataggaacatggatagttttttaatggaaatgcttgtttcttcAGGGGCAAGATGTTGCTTTTGAGCCAGCAAAGCTTCTCTGGCTTATCCAGAGGGATTTCCTCC

upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA02G16130.1 (Glycine max), 3'ss of exon 9
gtaatcttcaagccagttttattttctttttttgcttatgtatattctctggtttgttgtaataaatctttctaaaagtgaatgcttttaataaagctgatctttttcttgtttttgaatggatattgcagGGACAAGATGTTGCCTTTGAACCTGCTAAGCTTCTGTGGCTTATCCAACGTGATTTTCTAC
                             |||  || || |   |||  |  ||| |  | |||  | ||| | |     | ||   || ||||      | || ||    | |||| ||  || ||  |||| ||||||||||| |||||||||||||||||  | ||||| ||||||||||||||| | |
-----------------------------tttatctaatcttccttcctttctttctatttatatttattttttatgtaaactgtcattgataatttgatttttgtttgaatgtttggat--attttttagGGTCAAGATGTTGCATTTGAACCTGCTAAGCTCTTATGGCTCATCCAACGTGATTTTTTGC

upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA10G03660.1 (Glycine max), 3'ss of exon 10
gtaatcttcaagccagttttattttctttttttgcttatgtatattctctggtttgttgtaataaatctttctaaaagtgaatgcttttaataaagctgatctttttcttgtttttgaatggatattgcagGGACAAGATGTTGCCTTTGAACCTGCTAAGCTTCTGTGGCTTATCCAACGTGATTTTCTAC
||||     ||| |  |    || |     ||    ||    |  | |||   |  || || | | | ||| |  ||     ||   || ||||      | || ||    | || | ||  || ||  |||| || |||||||| |||||||||||||||||  | ||||| ||||||||||||||| | |
gtaaaagctaagaccttagcgttgttaccattgatctaatcttcctttctttctatttctatttattttttatgcaaac---tgtcattgataatttgatttttgtttgaatgttcggat--attttatagGGTCAGGATGTTGCATTTGAACCTGCTAAGCTCTTATGGCTCATCCAACGTGATTTTTTGC

upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT2G38840.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaatcttcaagccagttttattttctttttttgcttatgtatattctctggtttgttgtaataaatctttctaaaagtgaatgcttttaataaagctgatctttttcttgtttttgaatggatattgcagGGACAAGATGTTGCCTTTGAACCTGCTAAGCTTCTGTGGCTTATCCAACGTGATTTTCTAC
                                      | ||   |  | |  | | ||| ||   ||||  |  | | | || |||     ||| ||      |||||  |||||  ||  ||  || ||||  |||||||||| ||||||||  | |||||||||||||||||||| ||||||||||| |
-------------------------------------gtataccctaacggaatggctgttat---tcttgatccatg-gcatccttc----aaaact---tcgtttctgatttttatat--atcctgtagGGTGAAGATGTTGCTTTTGAACCGTCAAAGCTTCTGTGGCTTATCCAGCGTGATTTTCTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgaatgcttttaataaagctgatctttttcttgtttttgaatggatattgcagGGACAAGATGTTGCCTTTGAACCTGCTAAGCTTCTGTGGCTTATCCAACGTGATTTTCTAC
     atgcttttaataaa  TA-rich tract