Sequence
atgc intronic sequence ATGC exonic sequencegcaagtgacaattattagtataattgcatgtttcaatttctcatttctgcattaactttgaggcttgtgtgatctttcatgatgaatgtagcttattaatctattttgctttcctcttcagATATCCAATTTTGGAACAAAAACAAGTCTATGGAAGGACTATCTGCAAAGTCGGTTGTTGTGAGCTTTATATCTCAGTTGATTGTCTTCCTCTATTTACT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0130g00170.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA06G16940.1 (Glycine max), 3'ss of exon 8
gcaagtgacaattattagtataattgcatgtttcaatttctcatttctgcattaactttgaggcttgtgtgatctttcatgatgaatgtagcttattaatctatt-ttgctttcctcttcagATATCCAATTTTGGAACAAAAACAAGTCTATGGAAGGACTATCTGCAAAGTCGGTTGTTGTGAGCTTTATATCTCAGTTGATTGTCTTCCTCTATTTACT
| | | | | || || | || || || || || ||| || | || ||| | | | || | || | ||| || | || ||||||||||||||||||| ||||| || |||||||||||||| ||||||||| | ||||||||||||||| | |||| | ||| ||||||| ||| | ||
------gtaagtcaattgtccaacagt---ctttaagaaagcacctc--caataag---gaaatgcatatgga-tttggttagaggtacaggtaatcatctaattattttctctcttcccagATATCCAATTTTGGAATAAAAATAAATCTATGGAAGGACTCTCTGCAAAGACCGTTGTTGTGAGCTTTGCTTGTCAGCTTATTATCTTCCTTTATCTGCT
upper sequence: Vv07s0130g00170.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA04G38120.1 (Glycine max), 3'ss of exon 8
gcaagtgacaattattagtataattgcatgtttcaatttctcatttctgcattaactttgaggcttgtgtgatctttcatgatgaatgtagcttattaatctatt-ttgctttcctcttcagATATCCAATTTTGGAACAAAAACAAGTCTATGGAAGGACTATCTGCAAAGTCGGTTGTTGTGAGCTTTATATCTCAGTTGATTGTCTTCCTCTATTTACT
||| | | ||| | ||| | | || | | || ||| | | | || |||| || ||| || || || ||| |||||||||||||||||||| || |||||||||||||| ||||||||| | ||||||||||||||| | |||| | || ||||||| ||| ||||
-----------------gta-agtcaattgtccaacagtctttaagcacctccaagaagaaaatccatatgga-tttggttagaggtacaggttatcaactaattattttgtttcttcctagACATCCAATTTTGGAACAAAAATAAATCTATGGAAGGACTCTCTGCAAAGACCGTTGTTGTGAGCTTTGCTTGTCAGCTTATCATCTTCCTTTATCTACT
upper sequence: Vv07s0130g00170.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: PP1S64_201V6.1 (Physcomitrella patens), 3'ss of exon 8
gcaagtgacaattattagtataattgcatgtttcaatttctcatttctgcattaactttgaggcttgtgtgatctttcatgatgaatgtagcttattaatctattttgctttcctcttcagATATCCAATTTTGGAACAAAAACAAGTCTATGGAAGGACTATCTGCAAAGTCGGTTGTTGTGAGCTTTATATCTCAGTTGATTGTCTTCCTCTATTTACT
|| || | | | || || | ||||| | | | || || | ||| || || || || | ||| || | || || ||||||| || ||||||||||| |||||||| ||||||||| |||| ||| ||| || ||| | | |||| | | |||||||| || || | || || |
----------------tgtttagtggaa--ctttaactcagcattt-tac-tgaatgttaatatatgtctg-tcatttgctttgccttgagcacataataagatcaattggtcggacgcagATATTCAGTTTTGGAACAAGAACAAGTCCATGGAAGGATTATCAGCACGGTCTGTCGTTATCAACTTTGTTTGCCAGTTGATCGTGTTTTTGTACTTGTT
upper sequence: Vv07s0130g00170.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: EFJ29253 (Selaginella moellendorffii), 3'ss of exon 8
gcaagtgacaattattagtataattgcatgtttcaatttctcatttctgcattaactttgaggcttgtgtgatctttcatgatgaatgtagc-ttattaatctattttgctttcctcttcagATATCCAATTTTGGAACAAAAACAAGTCTATGGAAGGACTATCTGCAAAGTCGGTTGTTGTGAGCTTTATATCTCAGTTGATTGTCTTCCTCTATTTACT
|| | || || | || || | || | | | | | | ||||||||| |||||||||||||||||||| ||||| || | || || || |||||||| | |||| | | |||| | | || |||||||| || |
--------------------------------------------------------------------gtaag--tttattgtctttgcggcactgtttcttaactcatgactacgttgtagATATCCAGTTTTGGAACAAAAACAAGTCGATGGAGGGCTTGTCAGCTCGATCAGTTGTTGTCAACTTTTTCTGTCAGCTTGTCGTTTTCCTCTACTTGTT
upper sequence: Vv07s0130g00170.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: EFJ13811 (Selaginella moellendorffii), 3'ss of exon 8
gcaagtgacaattattagtataattgcatgtttcaatttctcatttctgcattaactttgaggcttgtgtgatctttcatgatgaatgtagc-ttattaatctattttgctttcctcttcagATATCCAATTTTGGAACAAAAACAAGTCTATGGAAGGACTATCTGCAAAGTCGGTTGTTGTGAGCTTTATATCTCAGTTGATTGTCTTCCTCTATTTACT
|| | || || | ||| || | || | | | | | | ||||||||| |||||||||||||||||||| ||||| ||| | || || || |||||||| | |||| | | |||| | | || |||||||| || |
--------------------------------------------------------------------gtaag--tttattgtctttgtggcactgtttcttaactcatgactacgatgtagATATCCAGTTTTGGAACAAAAACAAGTCGATGGAGGGATTGTCAGCTCGATCAGTTGTTGTCAACTTTTTCTGTCAGCTTGTCGTTTTCCTCTACTTGTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110712610|gb|EE087807.1|EE087807EST: GGTGGTCTCATGTCTTCATTCGGTGTTTGATTTCTTGGCATTCAAGAATG ATATCCAATTTTGGAACAAAAACAAGTCTATGGAATGACTATCTGCAAAGT
genomic: GGTGGTCTCATGTCTTCATTCGGTGTTTGATTTCTTGGCATTCAAGAATGgcaagtgaca ... tcctcttcagATATCCAATTTTGGAACAAAAACAAGTCTATGGAAGGACTATCTGCAAAGT
EST:
gi|110701816|gb|EE079820.1|EE079820EST: GGTGGTCTCATGTCTTCATTCGGTGTTTGATTTCTTGGCATTCAAGAATG ATATCCAATTTTGGAACAAAAACAAGTCTATGGAAGGACTATCTGCAAAGT
genomic: GGTGGTCTCATGTCTTCATTCGGTGTTTGATTTCTTGGCATTCAAGAATGgcaagtgaca ... tcctcttcagATATCCAATTTTGGAACAAAAACAAGTCTATGGAAGGACTATCTGCAAAGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgtgatctttcatgatgaatgtagcttattaatctattttgctttcctcttcagATATCCAATTTTGGAACAAAAACAAGTCTATGGAAGGACTATCTGCAAAGTCGGTTGTTGTGAGCTTTATATCTCAGTTGATTGTCTTCCTCTATTTACT
tattaat putative branch site (score: 2)
tctattttgctttcct CT-rich tract
ttattaatctatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcaagtgacaattattagtataattgcatgtttcaatttctcatttctgcattaactttgaggcttgtgtgatctttcatgatgaatgtagcttattaatctattttgctttcctcttcagATATCCAATTTTGGAACAAAAACAAGTCTATGGAAGGACTATCTGCAAAGTCGGTTGTTGTGAGCTTTATATCTCAGTTGATTGTCTTCCTCTATTTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT