Sequence
atgc intronic sequence ATGC exonic sequence...cttcctttctcatttttgttggataactggctttgctctgtagcatttatctatggttattgttttgtgataatagctaaaggttggtgttctgttgcagTTCCACATTTTGAGAAAATGTTATATGACCAGGGGCAGCTCGCTAATGCTTATCTAGATGTTTTTTCCATCACAAAAGATGTCTTCTATTCATGTGTGTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0104g01480.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA19G39560.2 (Glycine max), 3'ss of exon 8
------------------------------------------------------------------------------------------------cttcctttctcatttttgtt-ggataactggctttgctctgtagcatttatctatggttattgttttg-tgataatagctaaaggttggtgttctgttgcagTTCCACATTTTGAGAAAATGTTATATGACCAGGGGCAGCTCGCTAATGCTTATCTAGATGTTTTTTCCATCACAAAAGATGTCTTCTATTCATGTGTGTC
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gtaagtttaccttgggcagcagtcatttctttgagtatatatttgatatgttatatgtatgagttgtaattctcaatatgaaaatacctgagcattttgatttggccatgttaattaggatgtgctgttatatccaatgctctttgttttaaaatattgtaaagatgattgatttgttgagctgttatatctttgcagTTCCACATTTTGAGAAGATGCTTTATGATCAAGGGCAGCTTGCTAATGTTTATCTAGATGCGTTTTCTATCACAAAAGATACCTTTTATTCATATATATC
upper sequence: Vv07s0104g01480.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA03G36910.1 (Glycine max), 3'ss of exon 8
-------------------------------------------------------------------------------------------cttcctttctcatttttgttggataactggctttgctctgtagcatttatctatggtt-attgttttgtgataatagctaa------aggttggtgttctgttgcagTTCCACATTTTGAGAAAATGTTATATGACCAGGGGCAGCTCGCTAATGCTTATCTAGATGTTTTTTCCATCACAAAAGATGTCTTCTATTCATGTGTGTC
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gtaagtttaacttgggcagcagtcatttctttgagtatatatttgatatgtacgtgtatcagctgtaattctcaatatgcaaatacctgagcattttgatttggccatgttaattacaatgtgttgttatatccaaatgctctttgttttgaaatgttgtaaagacaattaatttgttgggctgttatatctttgtagTTCCGCATTTTGAGAAGATGCTTTATGATCAAGGGCAGCTTGCCAATGTTTATCTGGATGCGTTTTCTATCACAAAAGATACCTTTTATTCTTATATATC
upper sequence: Vv07s0104g01480.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT4G03200.1 (Arabidopsis thaliana), 3'ss of exon 8
cttcctttctcatttttgttggataactggctttgctctgtagcatttatct-atggttattgttttgtgataatagc--taaaggttggtgttctgttgcagTTCCACATTTTGAGAAAATGTTATATGACCAGGGGCAGCTCGCTAATGCTTATCTAGATGTTTTTTCCATCACAAAAGATGTCTTCTATTCATGTGTGTC
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-----------------gtaaaacttcaaacagtatcctgtagtatcaaggtgatgaaaaatattttgagattgacgcattttttgctatttgtctggtgcagTTCCACATTTTGAGAAAATGCTGTATGATCAAGGGCAACTAGCTAATGTGTACCTCGACGGTTTTAGCATTACCAAGGACGTTATGTATTCTTATGTGGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttatctatggttattgttttgtgataatagctaaaggttggtgttctgttgcagTTCCACATTTTGAGAAAATGTTATATGACCAGGGGCAGCTCGCTAATGCTTATCTAGATGTTTTTTCCATCACAAAAGATGTCTTCTATTCATGTGTGTC
agctaaa putative branch site (score: 3)
ttctgtt putative PPT
ttattgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttcctttctcatttttgttggataactggctttgctctgtagcatttatctatggttattgttttgtgataatagctaaaggttggtgttctgttgcagTTCCACATTTTGAGAAAATGTTATATGACCAGGGGCAGCTCGCTAATGCTTATCTAGATGTTTTTTCCATCACAAAAGATGTCTTCTATTCATGTGTGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- tcctttc
- - - - - - - - - - ggataac
- - - - - - - - - - - - - -tggcttt
- - - - - - - - - - - - - - - - - - - tgtagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttggtg