Sequence
atgc intronic sequence ATGC exonic sequencegtatataaattttctattttcctttgaatatgatataggttatggaggttctttcttaatctctaatcagcctctcttttttcagGATTTGTCAGTTATGATTCACCAGCATCTGCTCAGTCTGCGATTAGTATGATGAACGGATGCCAATTAGGCGGTAAGAAGTTGAAGGTTCAACTTAAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0104g01150.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os05g30980.1 (Oryza sativa), 3'ss of exon 8
gtatataaattttctattttcctttgaatatgatataggttatggaggttctttcttaatctctaatcagcctctcttttttcagGATTTGTCAGTTATGATTCACCAGCATCTGCTCAGTCTGCGATTAGTATGATGAACGGATGCCAATTAGGCGGTAAGAAGTTGAAGGTTCAACTTAAAAG
||| ||| || || | | | | || | |||| | |||| |||| || | ||| | | |||| ||| | || |||||||| || || ||||| ||| | || ||||||||||||||||||| ||||||||| ||||| || |||| || ||||| || ||
gtaattaacttgtcc--taactgctaaccattgattgtattatcatg---ctttgttaa---ctggtt--cctgattgggtgcagGTTTTATAAGCTATGATTCTCCTGCTTCTGCACAGACAGCCATTAGTATGATGAACGGATACCAATTAGGTGGTAAAAAACTGAAAGTACAACTCAAGAG
upper sequence: Vv07s0104g01150.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA03G36650.2 (Glycine max), 3'ss of exon 8
gtatataaattttctattttcctttgaatatgatataggttatg-gaggttctttcttaatctctaatcagcctctcttttttcagGATTTGTCAGTTATGATTCACCAGCATCTGCTCAGTCTGCGATTAGTATGATGAACGGATGCCAATTAGGCGGTAAGAAGTTGAAGGTTCAACTTAAAAG
||| || || ||| ||| | |||| || || | | | | || || || ||| | ||| |||| ||||| ||||||||| | |||| ||||||| ||||| || ||||||||||| |||||||||||||| |||||||| || ||||| || ||||| ||
gtaagcttatgctccgtttattaatgactttgatgggttttgtgtggagcttgtgtttgat----gatgagcttgaatttg--cagGGTTTGTAAGTTATGATACCCCAGAGGCTGCTCAATCTGCCATCAGTATGATGAATGGATGCCAATTAGGAGGTAAGAAATTAAAGGTCCAGCTTAAGAG
upper sequence: Vv07s0104g01150.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA19G39300.1 (Glycine max), 3'ss of exon 8
gtatataaattttctattttcctttgaatatgatataggttatggaggttctttcttaatctctaatcagcctctcttt-tttcagGATTTGTCAGTTATGATTCACCAGCATCTGCTCAGTCTGCGATTAGTATGATGAACGGATGCCAATTAGGCGGTAAGAAGTTGAAGGTTCAACTTAAAAG
||| || || |||| ||||| |||| |||| || || | | | | || ||| ||| || |||| ||||| ||||||||| | |||| ||||||| ||||| || ||||||||||| |||||||||||||| || ||||| || ||||| || ||||| ||
gtaagcttatgctccatttattaatgaatttgatg--ggttttg----tttggagcttgtgtttgatgagctcgaatttgttgcagGGTTTGTAAGTTATGATACCCCAGAGGCTGCTCAATCTGCCATCAGTATGATGAATGGATGCCAATTAGGAGGAAAGAAATTAAAGGTCCAGCTTAAGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|349829854|gb|FQ422167.1|FQ422167EST: GAGTGCCAAGGTCTTTGTCGACAAAGCAACTGGTGCTAGCAAATGTTTTG GATTTGTCAGTTATGATTCACCAGCATCTGCTCAGTCTGCGATTAGTATGA
genomic: GAGTGCCAAGGTCTTTGTCGACAAAGCAACTGGTGCTAGCAAATGTTTTGgtatataaat ... cttttttcagGATTTGTCAGTTATGATTCACCAGCATCTGCTCAGTCTGCGATTAGTATGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgatataggttatggaggttctttcttaatctctaatcagcctctcttttttcagGATTTGTCAGTTATGATTCACCAGCATCTGCTCAGTCTGCGATTAGTATGATGAACGGATGCCAATTAGGCGGTAAGAAGTTGAAGGTTCAACTTAAAAG
ctctaat putative branch site (score: 3)
tcagcctctctttttt CT-rich tract
tttcttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatataaattttctattttcctttgaatatgatataggttatggaggttctttcttaatctctaatcagcctctcttttttcagGATTTGTCAGTTATGATTCACCAGCATCTGCTCAGTCTGCGATTAGTATGATGAACGGATGCCAATTAGGCGGTAAGAAGTTGAAGGTTCAACTTAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG