1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...taggctttaatcttagtttcagcatgctggatttgctccccatttggctgtacttacatggagggttaacatgttgatttcttgaattttttgtttgcagCACTGGTCAGAAATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTG
species | Vitis vinifera |
transcript | Vv07s0104g00900.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTCTCATACGCTGCTACTTCTCCCCGTCTTATAG CACTGGTCAGAAATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATEST: gi|352778369|gb|FQ465679.1|FQ465679
genomic: CTCTCATACGCTGCTACTTCTCCCCGTCTTATAGgtaatggcta ... ttgtttgcagCACTGGTCAGAAATACATCTACTCTGGATCTAGCGATTCTTGCATTTATAT
EST: CATTCAGTCCTGCGTACTCTCATACGCTGCTACTTCTCCCCGTCTTATAG CACTGGTCAGAAATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATEST: gi|110383437|gb|EC947810.1|EC947810
genomic: CATTCAGTCCTGCGTACTCTCATACGCTGCTACTTCTCCCCGTCTTATAGgtaatggcta ... ttgtttgcagCACTGGTCAGAAATACATCTACTCTGGATCTAGCGATTCTTGCATTTATAT
EST: CATTCAGTCCTGCGTACTCTCATACGCTGCTACTTCTCCCCGTCTTATAG CACTGGTCAGAAATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATEST: gi|27579975|gb|CB002670.1|CB002670
genomic: CATTCAGTCCTGCGTACTCTCATACGCTGCTACTTCTCCCCGTCTTATAGgtaatggcta ... ttgtttgcagCACTGGTCAGAAATACATCTACTCTGGATCTAGCGATTCTTGCATTTATAT
EST: CATTCAGTCCTGCGTACTCTCATACGCTGCTACTTCTCCCCGTCTTATAG CACTGGTCAGAAATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATEST: gi|352778075|gb|FQ467128.1|FQ467128
genomic: CATTCAGTCCTGCGTACTCTCATACGCTGCTACTTCTCCCCGTCTTATAGgtaatggcta ... ttgtttgcagCACTGGTCAGAAATACATCTACTCTGGATCTAGCGATTCTTGCATTTATAT
EST: CATTCAGTCCTGCGTACTCTCATACGCTGCTACTTCTCCCCGTCTTATAG CACTGGTCAGAAATACATCTACTCTGGATCTAGGGATTCTTGCATTTATATEST: gi|34542793|gb|CF511025.1|CF511025
genomic: CATTCAGTCCTGCGTACTCTCATACGCTGCTACTTCTCCCCGTCTTATAGgtaatggcta ... ttgtttgcagCACTGGTCAGAAATACATCTACTCTGGATCTAGCGATTCTTGCATTTATAT
EST: AGTCCTGCGTACTCTCATACGCTGCTACTTCTCCCCGTCTTATAG CACTGGTCAGAAATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATEST: gi|30328821|gb|CD012083.1|CD012083
genomic: AGTCCTGCGTACTCTCATACGCTGCTACTTCTCCCCGTCTTATAGgtaatggcta ... ttgtttgcagCACTGGTCAGAAATACATCTACTCTGGATCTAGCGATTCTTGCATTTATAT
EST: CATTCAGTCCTGCGTACTCTCATACGCTGCTACTTCTCCCCGTCTTATAG CACTGGTCAGAAATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATEST: gi|110382432|gb|EC939539.1|EC939539
genomic: CATTCAGTCCTGCGTACTCTCATACGCTGCTACTTCTCCCCGTCTTATAGgtaatggcta ... ttgtttgcagCACTGGTCAGAAATACATCTACTCTGGATCTAGCGATTCTTGCATTTATAT
EST: CATTCAGTCCTGCGTACTCTCATACGCTGCTACTTCTCCCCGTCTTATAG CACTGGTCAGAAATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATEST: gi|352781787|gb|FQ469085.1|FQ469085
genomic: CATTCAGTCCTGCGTACTCTCATACGCTGCTACTTCTCCCCGTCTTATAGgtaatggcta ... ttgtttgcagCACTGGTCAGAAATACATCTACTCTGGATCTAGCGATTCTTGCATTTATAT
EST: CATTCAGTCCTGCGTACTCTCATACGCTGCTACTTCTCCCCGTCTTATAG CACTGGTCAGAAATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATEST: gi|37183856|gb|CF603210.1|CF603210
genomic: CATTCAGTCCTGCGTACTCTCATACGCTGCTACTTCTCCCCGTCTTATAGgtaatggcta ... ttgtttgcagCACTGGTCAGAAATACATCTACTCTGGATCTAGCGATTCTTGCATTTATAT
EST: CATTCAGTCCTGCGTACTCTCATACGCTGCTACTTCTCCCCGTCTTATAG CACTGGTCAGAAATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATEST: gi|352769756|gb|FQ468684.1|FQ468684
genomic: CATTCAGTCCTGCGTACTCTCATACGCTGCTACTTCTCCCCGTCTTATAGgtaatggcta ... ttgtttgcagCACTGGTCAGAAATACATCTACTCTGGATCTAGCGATTCTTGCATTTATAT
EST: CATTCAGTCCTGCGTACTCTCATACGCTGCTACTTCTCCCCGTCTTATAG CACTGGTCAGAAATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATEST: gi|34542877|gb|CF511109.1|CF511109
genomic: CATTCAGTCCTGCGTACTCTCATACGCTGCTACTTCTCCCCGTCTTATAGgtaatggcta ... ttgtttgcagCACTGGTCAGAAATACATCTACTCTGGATCTAGCGATTCTTGCATTTATAT
EST: CATTCAGTCCTGCGTACTTTCATACGCTGCTACTTCTCCCCGTCTTATAG CACTGGTCAGAAATACATTTACTCTGGATCTAGCGATTCTTGCATTTATAT
genomic: CATTCAGTCCTGCGTACTCTCATACGCTGCTACTTCTCCCCGTCTTATAGgtaatggcta ... ttgtttgcagCACTGGTCAGAAATACATCTACTCTGGATCTAGCGATTCTTGCATTTATAT
ggctgtacttacatggagggttaacatgttgatttcttgaattttttgtttgcagCACTGGTCAGAAATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTG
ttttttgttt CT-rich tract
atttcttgaatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taggctttaatcttagtttcagcatgctggatttgctccccatttggctgtacttacatggagggttaacatgttgatttcttgaattttttgtttgcagCACTGGTCAGAAATACATCTACTCTGGATCTAGCGATTCTTGCATTTATATTTATGATTTG
- - - - - - - - - - -gcatgct
- - - - - - - - - - - - - - - - - - tccccat
- - - - - - - - - - - - - - - - - - - - - - tggctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - tacatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgtt