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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtctttcatttcaggaaaagttttccatttattaccaaagtcttaatagatttattagataattcttggtacatttgcctgcagGACATGGAGATTTGGGAGATGGTTGGGCTGTGGCATTATCCTATACCTGGTTTCTTTCTGCTTGCACAGTTTGGTCTTGGAATTCTGGTTGCTGTGGGTA

Basic information

species Vitis vinifera
transcript Vv07s0104g00760.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0104g00760.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA02G16900.1 (Glycine max), 3'ss of exon 2
---------------gtagtctttcatttcaggaaaagttttccatttattaccaaagtcttaatagatttattagataattcttggtacatttgcctgcagGACATGGAGATTTGGGAGATGGTTGGGCTGTGGCATTATCCTATACCTGGTTTCTTTCTGCTTGCACAGTTTGGTCTTGGAATTCTGGTTGCTGTGGGTA
               |  |  |    |||||||   |   ||    | | |   ||      | |  | | |||  | |  | ||  | | |||     ||||||||| | || ||||||||||| || |||||||| ||||| |||||||| || ||| |||| ||||| ||| ||||||||||| |||||||  | ||||
tgaattggaaacttggacgggtaatctttcagggtgacaattgttataactgataagcatacattccactaattgcaaatattttcattccttt--taacagGACATGAAAATCTGGGAGATGGTGGGACTGTGGCACTATCCAATACCTGGATTTTTTTTGCTCGCACAATTTTGTCTTGGAATTTTGGTTGCATTAGGTA

upper sequence: Vv07s0104g00760.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT2G48060.1 (Arabidopsis thaliana), 3'ss of exon 9
gtagtctttcatttcaggaaaagttttccatttattaccaaagtcttaatagatttattagataattcttggtacatttgcctgcagGACATGGAGATTTGGGAGATGGTTGGGCTGTGGCATTATCCTATACCTGGTTTCTTTCTGCTTGCACAGTTTGGTCTTGGAATTCTGGTTGCTGTGGGTA---------------------------------------------------------------------
||| | | |  |    |   ||  | | ||  || |   | |    ||| |  |  |||| | || |  ||    |  |   | ||||||||| | |||||||||||||| || || ||||||||| |||||||||| |||||| ||||||||||||||||| | || ||  |||| ||  ||||||                                                                     
gtaatatattctcgatgcgcaaaatcttcaactactttaagaaaactaagatgtaaatta-acaactagtgtcttaaata--tacaggacatgcaaatttgggagatggtgggactttggcattatactatacctggattctttttgcttgcacagTTTGGTTTGGGGATGTTGGTCGCGTTGGGTAATCTTGTAAACAATTCTGTTTTTCTGTACCTGTCTGAAGAGAGCTCCAGATCTTCCAATGAGAGATCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattaccaaagtcttaatagatttattagataattcttggtacatttgcctgcagGACATGGAGATTTGGGAGATGGTTGGGCTGTGGCATTATCCTATACCTGGTTTCTTTCTGCTTGCACAGTTTGGTCTTGGAATTCTGGTTGCTGTGGGTA
           tcttaat  putative branch site (score: 3)
                                            tttgcct  putative PPT
       aaagtcttaatagatt  TA-rich tract