Sequence
atgc intronic sequence ATGC exonic sequence...ttcttttgttttctctttgctattttaatttcagcatataacatattagcctttgcattatttgggtgtgtataaatatcatttcttcaaaccttttcagTTACTATGATCCATATAGAGGAGTGATCGTATATTTTCGAGTCATTGATGGGACTATAAAGAAAGGTGACAGGATTTATTTTATGGCTAGCAAGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os02g06300.1 (Oryza sativa), 3'ss of exon 8
-------------------------------ttcttttgttttc--------tctttgctattttaatttcagcat----------ataacatattagcctttg-cattatttgggtgtgtataaata-----tcatttcttcaaacct-----tttcagTTACTATGATCCATATAGAGGAGTGATCGTATATTTTCGAGTCATTGATGGGACTATAAAGAAAGGTGACAGGATTTATTTTATGGCTAGCAAGAAG
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gtatcttttaagaacttagactatttagaatctcctcagtcctcaatggatgtttcaggtgctaaaattacaaaatgcagacaatgatactacaatggtcttcaattttttttttgtgcatatacctgaatccttattcttgtttgtctatgggtttcagTTATTATGATCCATACAGAGGTGTAATTGTATATTTTCGAGTTGTTGATGGCAGTATAAAGAAAGGGGACAAAATATGTTTTATGGCTAGCGGAAAG
upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA04G38360.1 (Glycine max), 3'ss of exon 8
-ttcttttgttttctctttgctattttaatttcagcatataacatattagcctttgcatta----tttgggtgtgtataaatatcatttcttcaaaccttttcagTTACTATGATCCATATAGAGGAGTGATCGTATATTTTCGAGTCATTGATGGGACTATAAAGAAAGGTGACAGGATTTATTTTATGGCTAGCAAGAAG
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atggcagattaatccccctagtatgttg-tgtcaactaacattcttttacatgcggtatttatacttcatgcactcatatttattatttctttaca----tgcagCTACTATGATCCATATAGAGGTGTTATTGTATACTTTCGAGTTGTAGATGGGACTATAAAGAAAGGTGACAGAGTTTATTTTATGGCTAGTGGGAAG
upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA06G16700.1 (Glycine max), 3'ss of exon 8
-ttcttttgttttctctttgctattttaatttcagcatataacatattagcc----tttgcattatttgggtgtgtataaatatcatttcttcaaaccttttcagTTACTATGATCCATATAGAGGAGTGATCGTATATTTTCGAGTCATTGATGGGACTATAAAGAAAGGTGACAGGATTTATTTTATGGCTAGCAAGAAG
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atggtagattaaaccccctagtatgttg-tgtcagctaacattcttttgcatgtgatatttatccttcaggcacttacatttattatttttttaaa----tgcagCTACTACGATCCATATAGAGGTGTTATTGTATACTTTCGAGTTGTAGATGGGACTATAAAGAAAGGTGACAGAGTTTATTTTATGGCTAGTGGGAAG
upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA04G33480.1 (Glycine max), 3'ss of exon 2
ttcttttgttttctctttgctattttaatttcagcatataacatattagcctttgcattatttgggtgtgtataaatatcatttcttcaaaccttttcagTTACTATGATCCATATAGAGGAGTGATCGTATATTTTCGAGTCATTGATGGGACTATAAAGAAAGGTGACAGGATTTATTTTATGGCTAGCAAGAAG
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--------------------------------------------------------------------------------------------------------------------------------gtatacttttgagttgtagatgggactatgaagAAAGGTGACAGAGTTTATTTTATGGCTAGTGGGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttagcctttgcattatttgggtgtgtataaatatcatttcttcaaaccttttcagTTACTATGATCCATATAGAGGAGTGATCGTATATTTTCGAGTCATTGATGGGACTATAAAGAAAGGTGACAGGATTTATTTTATGGCTAGCAAGAAG
ccttttc CT-rich tract
tataaatatcatttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttcttttgttttctctttgctattttaatttcagcatataacatattagcctttgcattatttgggtgtgtataaatatcatttcttcaaaccttttcagTTACTATGATCCATATAGAGGAGTGATCGTATATTTTCGAGTCATTGATGGGACTATAAAGAAAGGTGACAGGATTTATTTTATGGCTAGCAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - -ttcagca
- - - - - - - - - - - - - - - - - - - - - - - - -cctttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaata