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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactacatttacaattttttttcctgccactagtatgtgattatatgcacattatggatttcatcaaggaacttattctgattgtctcagaatatatattttcttgtcttgactgttctttgatggtgatgacacacttccacatccttctcagGTTGCTTTTCAGCAAGCAGACTTTGCTGGTTGGAATCTGTGGGCAGCAATCAATGACCGTCCTTTACTGCCATTTAG

Basic information

species Vitis vinifera
transcript Vv07s0031g02690.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02690.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os06g11140.1 (Oryza sativa), 3'ss of exon 8
gtactacatttacaattttttttcctgccactagtatgtgattatatgcacattatggatttcatcaaggaacttattctgattgtctcagaatatatattttcttgtcttgactgttctttgatggtgatgacacacttccacatccttctcagGTTGCTTTTCAGCAAGCAGACTTTGCTGGTTGGAATCTGTGGGCAGCAATCAATGACCGTCCTTTACTGCCATTTAG
                                                                  |||| | ||     || |  ||      | ||  |     | ||||   |||  || |     ||||     || | | |      |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||||||||| ||| | |||||||| ||
----------------------------------------------------------------gtaaggcattttactggactaactttaggcagatgct-----gccttggtagtttcttaac--caatga-----ttactcttatcatgcagGTTGCTTTTCAACAAGCAGATTTTGCTGGATGGAATCTCTGGGCAGCAATCAATGACCGACCTCTTCTGCCATTCAG

upper sequence: Vv07s0031g02690.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA05G32900.1 (Glycine max), 3'ss of exon 8
gtactacatttacaattttttttcctgccactagtatgtgattatatgcacattatggatttcatcaaggaacttattctgattgtctcagaatatatattttcttgtcttgactgttctttgatggtgatgacac-acttccacatccttctcagGTTGCTTTTCAGCAAGCAGACTTTGCTGGTTGGAATCTGTGGGCAGCAATCAATGACCGTCCTTTACTGCCATTTAG
                                                                    | ||||  | ||   | ||  |  | || ||| |  || ||  ||        |  |  |  |   |    || |   | | |  |||||||| |||||||||||||||||  ||||||||||| ||||||| ||||||||||  |||||  |  | ||||||||
------------------------------------------------------------------gtgtaactgctgcttgatatcctatgacatgtatataattttcaggataacatcatatttattttctgattgttttcctttaccttgcagGTTGCATTTCAGCAAGCAGACTTCACTGGTTGGAATTTGTGGGCTGCAATCAATGGGCGTCCACTTTTACCATTTAG

upper sequence: Vv07s0031g02690.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G00520.1 (Glycine max), 3'ss of exon 9
------------------gtactacatttacaattttttttcctgccactagtatgtgattatatgcacattatggatttcatcaaggaacttattctgattgtctcagaatatatattttcttgtcttgactgttctttgatggtgatgacacacttccacatccttctcagGTTGCTTTTCAGCAAGCAGACTTTGCTGGTTGGAATCTGTGGGCAGCAATCAATGACCGTCCTTTACTGCCATTTAG-------------------
                  |   | ||  |  ||   |  |||| |||||| | |     |||  |||   ||    ||   ||      | ||| | ||        | |||    |   | |  || |   | || | |||| ||           | |   | | |  |||||||| |||||||||||||||||  ||||||||||| ||||||| || |||||||  |||||  |  | ||||||||                   
gtgactcctttgcattaagggattcaaatggaaggatccttccagccact-gcacagatttaactgctgcttg-atatcctatgcgaataattactatggcatgtatataattctgaggatatcatcatatttattttctgattgt-----------ttcctttaccttgcagGTTGCATTTCAGCAAGCAGACTTCACTGGTTGGAATTTGTGGGCTGCGATCAATGGGCGTCCACTTTTACCATTTAGGTACTGTTGCATTCAGTTT

upper sequence: Vv07s0031g02690.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT5G08740.1 (Arabidopsis thaliana), 3'ss of exon 8
gtactacatttacaattttttttcctgccactagtatgtgattatatgcacattatggatttcatcaaggaacttattctgattgtctcagaatatatattttcttgtcttgactgttctttgatggtgatgacacacttccacatccttctcagGTTGCTTTTCAGCAAGCAGACTTTGCTGGTTGGAATCTGTGGGCAGCAATCAATGACCGTCCTTTACTGCCATTTAG
                                                                         | |     |  |   || |||||  |     |  | ||  || |   || ||     ||||||       ||    | |||||||||||||||  ||||||||||| |||| |||||| | |||||||| || ||| |||| |||||| | ||||| ||
------------------------------------------------------------------------gtgagaaaaaaggctacaaaatatgaacacattcatgtt--ctataacttaatcagagtgacacggcaat-caaaaatttcagGTTGCTTTTCAAGAAGCAGACTTTACTGGCTGGAATATATGGGCAGCTATAAATAACCGACCTTTATTACCATTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|45771086|gb|CN006938.1|CN006938
EST:     CTTCTTCTTTGAGGGATTCCAAAGGAAAGCTTCTTCCAGCAACTGCACAG                         GTTGCTTTTCAGCAAGCAGACTTTGCTGGTTGGAATCTGTGGGCAGCAATC
genomic: CTTCTTCTTTGAGGGATTCCAAAGGAAAGCTTCTTCCAGCAACTGCACAGgtactacatt ... tccttctcagGTTGCTTTTCAGCAAGCAGACTTTGCTGGTTGGAATCTGTGGGCAGCAATC
EST: gi|32458384|gb|CD799558.1|CD799558
EST:     CTTCTTCTTTGAGGGATTCCAAAGGAAAGCTTCTTCCAGCAACTGCACAG                         GTTGCTTTTCAGCAAGCAGACTTTGCTGGTTGGAATCTGTGGGCAGCAATC
genomic: CTTCTTCTTTGAGGGATTCCAAAGGAAAGCTTCTTCCAGCAACTGCACAGgtactacatt ... tccttctcagGTTGCTTTTCAGCAAGCAGACTTTGCTGGTTGGAATCTGTGGGCAGCAATC
EST: gi|110428612|gb|EC995089.1|EC995089
EST:     CTTCTTCTTTGAGGGATTCCAAAGGAAAGCTTCTTCCAGCAACTGCACAG                         GTTGCTTTTCAGCAAGCAGACTTTGCTGGTTGGAATCTGTGGGCAGCAATC
genomic: CTTCTTCTTTGAGGGATTCCAAAGGAAAGCTTCTTCCAGCAACTGCACAGgtactacatt ... tccttctcagGTTGCTTTTCAGCAAGCAGACTTTGCTGGTTGGAATCTGTGGGCAGCAATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcttgtcttgactgttctttgatggtgatgacacacttccacatccttctcagGTTGCTTTTCAGCAAGCAGACTTTGCTGGTTGGAATCTGTGGGCAGCAATCAATGACCGTCCTTTACTGCCATTTAG
                                     cttccacatccttctc  CT-rich tract