Sequence
atgc intronic sequence ATGC exonic sequence...tgaatcttggaaaattgtttgtggctagagctactggtgatgattgactctttgtctataaattcagttgcttgatataagttgctgtggttaaatgcagTTATTGTGGATCTTTGGAGCCAATGCCTATGCCTGCAGGCAATGGTGGTATTGCCCATGCTTTATTTGTCTCCAAAGATCGCAGAATTCCAAAGATCCGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g02190.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os03g03710.1 (Oryza sativa), 3'ss of exon 8
tgaatcttggaaaattgtttgtggctagagctact--ggtgatgattg-actctttgtctataaattcagttgcttgatataagt-tgctgtggttaaatg-cagTTATTGTGGATCTTTGGAGCCAATGCCTATGCCTGCAGGCAATGGTGGTATTGCCCATGCTTTATTTGTCTCCAAAGATCGCAGAATTCCAAAGATCCGG
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-----gtgcttagattgtcatctaccaaaactattcagtctataattgcaatttaccttaactgttttatgtgcttcacattcatacaatgcctgcaaacggcagGTATTGTGGGTCCTTGGAGCCAATGCCCATGCCTGCTGGTAGTGGAGGCGTTGCTCATGCTCTATTTGTGTCTAAAGATCGACGAATCCCAAAGATTCGA
upper sequence: Vv07s0031g02190.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G031859_T01 (Zea mays), 3'ss of exon 8
tgaatcttggaaaattgtttgtggctagagctactggtgatgattgactctttgtctataaattcagttgcttgat-ataagttgctgtggttaaatgcagTTATTGTGGATCTTTGGAGCCAATGCCTATGCCTGCAGGCAATGGTGGTATTGCCCATGCTTTATTTGTCTCCAAAGATCGCAGAATTCCAAAGATCCGG
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--------gtgagtttctatgtgttatgagtta-----gatttcttatgtgtactatcctgatcttgtcattatatgataaggttctggtgttc--tgcagGTACTGTGGATCCTTGCAGCCGATGCCCATGCCTGCTGGTAGTGGGGGTGTCGCTCATGCTTTATTTGTTTCAAAAGATCGAAGAGTTCCTAAGATTCGA
upper sequence: Vv07s0031g02190.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA04G39980.1 (Glycine max), 3'ss of exon 8
tgaatcttggaaaattgtttgtggctagagctactggtg-atgattgactctttg--tctataaattcagttgcttgatataagttgctgtggttaaatg------cagTTATTGTGGATCTTTGGAGCCAATGCCTATGCCTGCAGGCAATGGTGGTATTGCCCATGCTTTATTTGTCTCCAAAGATCGCAGAATTCCAAAGATCCGG
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------ttgctgaaatgttaaccaataagtttgtgtctgtatatttcattttctaattgtatatgttctgttgtttcatg---attggtatatttaaatctcttttcagGTATTGTGGATCTTTGGAGCCAATGCCTATGCCTGCAGGGAGTGGTGGTATTGCCCATGCCTTGTTTGTCTCCAAAGATCGCAGAATTCCCAAGATTCGA
upper sequence: Vv07s0031g02190.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA12G34640.1 (Glycine max), 3'ss of exon 8
tgaatcttggaaaattgtttgtggctagagctactggtg-atgattgactcttt--gtctataaattcagttgcttgatataagttgctgtggttaaatg------cagTTATTGTGGATCTTTGGAGCCAATGCCTATGCCTGCAGGCAATGGTGGTATTGCCCATGCTTTATTTGTCTCCAAAGATCGCAGAATTCCAAAGATCCGG
||| || |||| || | || || || | | | | || |||| ||| |||| || || ||| | | |||||| ||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| || |||||||||||||||||||||||||| ||||| ||
------ttgctgaaatgttaaccaataagtttgtgtctgtatatttcattttctaagtgtatatgttctgttgtttcatg---attggtatatttaaatctcttttcagGTATTGTGGATCTTTGGAGCCAATGCCTATGCCTGCAGGGAGTGGTGGTATTGCCCATGCCTTGTTTGTCTCCAAAGATCGCAGAATTCCCAAGATTCGA
upper sequence: Vv07s0031g02190.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA06G14870.1 (Glycine max), 3'ss of exon 8
tgaatcttggaaaattg-tttgtggctagagctactggtgatgattgactctttgtctataaattcagttgcttgat-ataagt-tgctgtggttaaat--gcagTTATTGTGGATCTTTGGAGCCAATGCCTATGCCTGCAGGCAATGGTGGTATTGCCCATGCTTTATTTGTCTCCAAAGATCGCAGAATTCCAAAGATCCGG
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----tgttgaaatgttaaccaataagtatgggt-ctgtgtatttcattttctaagtgtatatgttctgttgtttcattattggtatatttaaattgtcttttcagGTATTGTGGATCTTTGGAGCCAATGCCTATGCCTGCAGGGAATGGTGGTATTGCCCATGCCTTGTTTGTCTCCAAAGATCGCAGAACTCCCAAGATTCGA
upper sequence: Vv07s0031g02190.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT2G17510.2 (Arabidopsis thaliana), 3'ss of exon 9
-tgaatcttggaaaattgtttgtggctagagctactggtgatgattgactctttgtctataaattcagttgcttgatataagttgctgtggttaaatgcagTTATTGTGGATCTTTGGAGCCAATGCCTATGCCTGCAGGCAATGGTGGTATTGCCCATGCTTTATTTGTCTCCAAAGATCGCAGAATTCCAAAGATCCGG
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ctttgtct-gtgcaattatgctttacttttccttaagtttgtcttctgtttcaagccatggtttctggatgacggttcctaatttgtatgttttcatgcagCTATTGTGGATCTCTTGAACCGATGTCACTACCTGCTGGTAGTGGTGGAACGGCACATGCTTTATTTGTCTCTAAAGATCGCAGAATTCCCAAGATCCGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110357405|gb|EC920922.1|EC920922EST: TGCCGTCCATCTGGGCGTGTTGTTGGTATTATAAAGCGGAATTGGCACTC TTATTGTGGATCTTTGGAGCCAATGCCTATGCCTGCAGGCAATGGTGGTAT
genomic: TGCCGTCCATCTGGGCGTGTTGTTGGTATTATAAAGCGGAATTGGCACTCgtaagttaac ... ttaaatgcagTTATTGTGGATCTTTGGAGCCAATGCCTATGCCTGCAGGCAATGGTGGTAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gactctttgtctataaattcagttgcttgatataagttgctgtggttaaatgcagTTATTGTGGATCTTTGGAGCCAATGCCTATGCCTGCAGGCAATGGTGGTATTGCCCATGCTTTATTTGTCTCCAAAGATCGCAGAATTCCAAAGATCCGG
tttgtctataaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgaatcttggaaaattgtttgtggctagagctactggtgatgattgactctttgtctataaattcagttgcttgatataagttgctgtggttaaatgcagTTATTGTGGATCTTTGGAGCCAATGCCTATGCCTGCAGGCAATGGTGGTATTGCCCATGCTTTATTTGTCTCCAAAGATCGCAGAATTCCAAAGATCCGG
- - - - ggaaaat
- - - - - - - - - - -tggctag
- - - - - - - - - - - - - - - - - -ggtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctgt