Sequence
atgc intronic sequence ATGC exonic sequence...atggatctgaataatctgaaatttatcttattatataattttttgtgtgatttatttatttaaggagtctgaatgaacaatcatgttgtacaattttcagTCCATTATACGGAGTAATTTGCAATATGCGGCTCTAAGTGCTTTGAGAAGACTTCCTCTAGATCCAGGAAATCCAGCATTTCTTCATCGGGCTGTGCAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os03g15900.2 (Oryza sativa), 3'ss of exon 4
atggatctgaataatctgaaattt-atcttattatataattttttgtgtgatttatttatttaaggagtctgaatgaacaatcatgttgtacaatttt---cagTCCATTATACGGAGTAATTTGCAATATGCGGCTCTAAGTGCTTTGAGAAGACTTCCTCTAGATCCAGGAAATCCAGCATTTCTTCATCGGGCTGTGCAGG
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-tgacaccacttcctgtttattttgagctggacttaaaattcctcactag---tatcagtacaagctgtctgatgatgcctttctaatttgcatttctttgcagTCTATTATACGGAGTAATTTGCAGTATGCTTCTCTAAGTGCCCTGAGAAGGCTTCCACTTGATCCTGGTAATCCGGCATTTCTGCACCGAGCTGTCCAAG
upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G03020.1 (Glycine max), 3'ss of exon 7
-----atggatctgaataatctgaaatttatcttattatataat--tttttgtgtgatttatttatttaaggagtctgaatgaacaatcatgttgtacaattttcagTCCATTATACGGAGTAATTTGCAATATGCGGCTCTAAGTGCTTTGAGAAGACTTCCTCTAGATCCAGGAAATCCAGCATTTCTTCATCGGGCTGTGCAGG
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aattcactgtgccacaagccctagtgtttaagttagtaggtgaagacacttgaatgatat---tatgttacatctctgacatgtta--tatgcttgatcatat--agTCTATCATCCGAAGCAATCTACAATATGCTGCCTTAAGTGCTCTGAGAAGACTCCCTCTGGATCCTGGAAATCCAGCATTTCTGCATTATGCTGTACAAG
upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA05G36530.1 (Glycine max), 3'ss of exon 7
-----atggatctgaataatctgaaatttatcttattatataat--tttttgtgtgatttatttatttaaggagtctgaatgaacaatcatgttgtacaattttcagTCCATTATACGGAGTAATTTGCAATATGCGGCTCTAAGTGCTTTGAGAAGACTTCCTCTAGATCCAGGAAATCCAGCATTTCTTCATCGGGCTGTGCAGG
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agttcactgtgccacaagccctagtgcttaagttagtaggtgaagacacttgaatgatat---tatattacatctctgacatgtta--tatgcttgatcatat--agTCTATCATCCGAAGCAATCTACAATATGCTGCCTTGAGTGCTCTGAGAAGACTCCCTCTGGATCCTGGGAATCCAGCATTTCTGCATTATGCTGTACAAG
upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT2G07360.1 (Arabidopsis thaliana), 3'ss of exon 7
atggatctgaata-atctgaaatttatcttattatataattttttg--tgtgatttatttatttaaggagtctgaatgaac--aatcatgttgtacaattt---tcagTCCATTATACGGAGTAATTTGCAATATGCGGCTCTAAGTGCTTTGAGAAGACTTCCTCTAGATCCAGGAAATCCAGCATTTCTTCATCGGGCTGTGCAGG
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--------gaatagaattcttcctcacttgagtatacagcttctggattgcagaaggtcaacactaaactttgttattaacttgagcgttttatctcgtttttgttagTCGATTATGCGAAGTAACTTGCAATACGCTGCTATGAGTGCACTGAGAAGACTCCCTCTTGATCCAGGAAATCCACTTTTTCTGCACCGTGCAGCTCAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtgatttatttatttaaggagtctgaatgaacaatcatgttgtacaattttcagTCCATTATACGGAGTAATTTGCAATATGCGGCTCTAAGTGCTTTGAGAAGACTTCCTCTAGATCCAGGAAATCCAGCATTTCTTCATCGGGCTGTGCAGG
ttttc CT-rich tract
tttatttatttaagga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atggatctgaataatctgaaatttatcttattatataattttttgtgtgatttatttatttaaggagtctgaatgaacaatcatgttgtacaattttcagTCCATTATACGGAGTAATTTGCAATATGCGGCTCTAAGTGCTTTGAGAAGACTTCCTCTAGATCCAGGAAATCCAGCATTTCTTCATCGGGCTGTGCAGG
- - - - - - - - - - - - - - - - - - - - - -tgtgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtt