Sequence
atgc intronic sequence ATGC exonic sequencegtggtttataaattctatgcaaaatcatttctgctcccatgattctttttatttggtggtttatgttttaattttgttctctttttctcttacccttcttatagGATTCTTGCAATAAAAAAAGTAATCAACAGAATCTGGGTACCATTAAATCTTCAAACTTATGTACTGAGATCATTGAGTACACCAGTGCTGATGAAACTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os06g07210.1 (Oryza sativa), 3'ss of exon 8
------gtggtttataaattctatgcaaaa-----tcatttctgctcccatgattctttttatt----tggtggtt-----tatgttttaattttgttctctttttctcttacccttcttatagGATTCTTGCAATAAAAAAAGTAATCAACAGAATCTGGGTACCATTAAATCTTCAAACTTATGTACTGAGATCATTGAGTACACCAGTGCTGATGAAACTG
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gtaaatttggtagcaaaattagtagcaaggagtacttgattttggacccaagattcctccaaatatgctgctggctatagtcaggttccaagtattcattccgaatgctcttgttgtcccacagGATACATGCAATAGGAAAAGTAACCAGCAGAATTTGGGCACAATTAAATCTTCAAACTTATGCACTGAGATAATTGAGTACACAAGCCCTACTGAAACTG
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G340527_T01 (Zea mays), 3'ss of exon 8
gtggtttataaattctatgcaaaatcatttctgctcccatgattctttttatttggtggtttatgttttaattttgttctctttttctcttacccttcttatagGATTCTTGCAATAAAAAAAGTAATCAACAGAATCTGGGTACCATTAAATCTTCAAACTTATGTACTGAGATCATTGAGTACACCAGTGCTGATGAAACTG
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gtacatt-tagtggctatcaaataggagtacctcctatttttgtctcttttgccaaaagtttccagttaaggatttcttgtaatggctattaactgtat-gcagGATACTTGCAATAGGAAAAGTAACCAGCAGAATCTGGGCACAATTAAATCGTCAAACTTGTGCACTGAGATAATTGAGTTTACAAGCCCTACTGAAACTG
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA04G39500.1 (Glycine max), 3'ss of exon 8
gtggtttataaattctatgcaaaatcatttctgctcccatgattctttttatttggtggttt-atgttttaattttgttct-ctttttctcttacccttcttatagGATTCTTGCAATAAAAAAAGTAATCAACAGAATCTGGGTACCATTAAATCTTCAAACTTATGTACTGAGATCATTGAGTACACCAGTGCTGATGAAACTG
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-------gtggaacacttagatgtcttttactttccccatgagattttgtatttattgttttcacctgttgaataaatccaacatttttatttacactact---agGATACTTGCAATAGGAAAAGCAACCAACAGAATTTGGGTACAATTAAATCATCAAACTTGTGTACTGAGATAATTGAGTATTCAAGTCCAACTGAAACTG
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA06G15350.1 (Glycine max), 3'ss of exon 8
gtggtttataaattctatgcaaaatcatttctgctcccatgattctttttatttggtggtttatgttttaattttgttct--ctttttctcttacccttcttatagGATTCTTGCAATAAAAAAAGTAATCAACAGAATCTGGGTACCATTAAATCTTCAAACTTATGTACTGAGATCATTGAGTACACCAGTGCTGATGAAACTG
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-------gtggtgttcttagatgtctttgactttcctcatgagattttgtatttattgttttcacccgttgagtaattccagcatttttgtttacactact---agGATACTTGCAATAGGAAAAGCAATCAACAGAATTTGGGTACAATTAAATCGTCAAACTTGTGTACTGAGATAATTGAATATTCAAGTCCAACTGAAACTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714052|gb|FC064127.1|FC064127EST: AAGTTTTGAAATCCCAGATAGAAACTGGAACCCCCTATATGCTGTTTAAG GATTCTTGCAATNNNNNNNGTAATCAACAGAATCTGGGTACCATTAAATCT
genomic: AAGTTTTGAAATCCCAGATAGAAACTGGAACCCCCTATATGCTGTTTAAGgtggtttata ... cttcttatagGATTCTTGCAATAAAAAAAGTAATCAACAGAATCTGGGTACCATTAAATCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatttggtggtttatgttttaattttgttctctttttctcttacccttcttatagGATTCTTGCAATAAAAAAAGTAATCAACAGAATCTGGGTACCATTAAATCTTCAAACTTATGTACTGAGATCATTGAGTACACCAGTGCTGATGAAACTG
ctcttac putative branch site (score: 3)
tgttttaattttgttc CT-rich tract
tttatgttttaatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtggtttataaattctatgcaaaatcatttctgctcccatgattctttttatttggtggtttatgttttaattttgttctctttttctcttacccttcttatagGATTCTTGCAATAAAAAAAGTAATCAACAGAATCTGGGTACCATTAAATCTTCAAACTTATGTACTGAGATCATTGAGTACACCAGTGCTGATGAAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT