1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gcatgtctcttgtgctttttgtgcatctcctgtgggtttttcatctacatttaatttattctatacattcttttattgttatttgattctttttttttttttttaatcatttgttgtattatcacagGTTGCTGCTGAAACAGTTGGTGACCATGGAGGTTATCCAATGGATAAGTCTTTGGAATATGTTTAAGGATGAATTTGAAAACGAGAAGAACATGCTTGGG
species | Vitis vinifera |
transcript | Vv07s0031g01970.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTTAACTCCACCTTGGAGGATAAGAATCTTTCTGAATTTC-AAATTTCAG GTTGCTGTTGAAACAGTTTGTGACCATGGAGGEST: gi|110391070|gb|EC956024.1|EC956024
genomic: CTTAACTCCACCTTGGAGGATAAGAATCTTTCTGAAATTCCAAATTTCAGgcatgtctct ... attatcacagGTTGCTGCTGAAACAGTTGGTGACCATGGAGG
EST: CTTAACTCCACCTTGGAGGATAAGAATCTTTCTGAAATTCCAAATTTCAG GTTGCTGCTGAAACAGTTGGTGACCATGGAGGTTATCCAATGGATAAGTCTEST: gi|110381624|gb|EC934958.1|EC934958
genomic: CTTAACTCCACCTTGGAGGATAAGAATCTTTCTGAAATTCCAAATTTCAGgcatgtctct ... attatcacagGTTGCTGCTGAAACAGTTGGTGACCATGGAGGTTATCCAATGGATAAGTCT
EST: CTTAACTCCACCTTGGAGGATAAGAATCTTTCTGAAATTCCAAATTTCAG GTTGCTGCTGAAACAGTTGGTGACCATGGAGGTTATCCAATGGATAAGTCTEST: gi|110387763|gb|EC952457.1|EC952457
genomic: CTTAACTCCACCTTGGAGGATAAGAATCTTTCTGAAATTCCAAATTTCAGgcatgtctct ... attatcacagGTTGCTGCTGAAACAGTTGGTGACCATGGAGGTTATCCAATGGATAAGTCT
EST: CTTAACTCCACCTTGGAGGATAAGAATCTTTCTGAAATTCCAAATTTCAG GTTGCTGCTGAAACAGTTGGTGACCATGGAGGTTATCCAATGGATAAGTCTEST: gi|110684729|gb|EE062340.1|EE062340
genomic: CTTAACTCCACCTTGGAGGATAAGAATCTTTCTGAAATTCCAAATTTCAGgcatgtctct ... attatcacagGTTGCTGCTGAAACAGTTGGTGACCATGGAGGTTATCCAATGGATAAGTCT
EST: CTTAACTCCACCTTGGAGGATAAGAATCTTTCTGAAATTCCAAATTTCAG GTTGCTGCTGAAACAGTTGGTGACCATGGAGGTTATCCAATGGATAAGTCTEST: gi|110387558|gb|EC952238.1|EC952238
genomic: CTTAACTCCACCTTGGAGGATAAGAATCTTTCTGAAATTCCAAATTTCAGgcatgtctct ... attatcacagGTTGCTGCTGAAACAGTTGGTGACCATGGAGGTTATCCAATGGATAAGTCT
EST: ATAAGAATCTTTCTGAAATTCCAAATTTCAG GTTGCTGCTGAAACAGTTGGTGACCATGGAGGTTATCCAATGGATAAGTCT
genomic: ATAAGAATCTTTCTGAAATTCCAAATTTCAGgcatgtctct ... attatcacagGTTGCTGCTGAAACAGTTGGTGACCATGGAGGTTATCCAATGGATAAGTCT
ttattgttatttgattctttttttttttttttaatcatttgttgtattatcacagGTTGCTGCTGAAACAGTTGGTGACCATGGAGGTTATCCAATGGATAAGTCTTTGGAATATGTTTAAGGATGAATTTGAAAACGAGAAGAACATGCTTGGG
ttttaat putative branch site (score: 3)
ttatttgattcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatgtctcttgtgctttttgtgcatctcctgtgggtttttcatctacatttaatttattctatacattcttttattgttatttgattctttttttttttttttaatcatttgttgtattatcacagGTTGCTGCTGAAACAGTTGGTGACCATGGAGGTTATCCAATGGATAAGTCTTTGGAATATGTTTAAGGATGAATTTGAAAACGAGAAGAACATGCTTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC