Sequence
atgc intronic sequence ATGC exonic sequence...gtccggactagtccaggttttccccccttccttgccccatcctttttcctttccccttttctacatcttgggtgtaattattttaaaacatactgtgcagGTTTTGGAGTTTCAGCAACGGAAATGCAGTGTAATATTTGACCTCTCATGTAATCTTGCGAGGGTATTGGAGTTCTGTACCCGTGAGATACCTCAAGCAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g01490.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G310283_T03 (Zea mays), 3'ss of exon 2
gtccggactagtccaggttttccccccttccttgccccatcctttttcctttccccttttctacatct---tgggtgt---aattattttaaaacatactgtg----cagGTTTTGGAGTTTCAGCAACGGAAATGCAGTGTAATATTTGACCTCTCATGTAATCTTGCGAGGGTATTGGAGTTCTGTACCCGTGAGATACCTCAAGCAT
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----------gccgagttttttttttatcatgaggcacaatgtgttcctttgttcctctggtgtaaccctgtaactatgaaaaatatgaccaatcatcttttattttcagGTTGCTGATTTGCAGCAGAGGAAGTGCAGTGTAATTTTTGATATCTCATGTAGCCTTGCGAGAATCTTGGAATTCTGTACCCGAGAGATTCCTTGTGCTT
upper sequence: Vv07s0031g01490.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA06G15090.1 (Glycine max), 3'ss of exon 7
----gtccggactagtccaggttttccccccttccttgccccatcctttttcctttccccttttctacatcttgggtgtaattattttaaaacatactgtgcagGTTTTGGAGTTTCAGCAACGGAAATGCAGTGTAATATTTGACCTCTCATGTAATCTTGCGAGGGTATTGGAGTTCTGTACCCGTGAGATACCTCAAGCAT
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caagacattgcatgcataaaattgaagttgtttcctattattataatggttgcttggctaattcatccatt----aatttatcgtcgcaacacttctttcacagGTAATAGAGTTTCAGCAAAGGAAATGCTGTGTCATATTTGATCTTTCATGTAATCTTACAAGGATTCTAGAGTTCTGCACTCGTGAGATTCCTCAAGCAT
upper sequence: Vv07s0031g01490.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA04G39780.1 (Glycine max), 3'ss of exon 7
---gtccggactagtccaggttttccccccttccttgccccatcctttttcctttccccttttctacatcttgggtgtaattattttaaaacatactgtgcagGTTTTGGAGTTTCAGCAACGGAAATGCAGTGTAATATTTGACCTCTCATGTAATCTTGCGAGGGTATTGGAGTTCTGTACCCGTGAGATACCTCAAGCAT
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taagattgaagttgtttctgttattataa--tgattgcttggctaattcagagtttgatatattcattccattaattta-ttgttgcaacacttctttctcagGTAATAGAGTTTCAGCAAAGGAAATGCTGTGTCATATTTGATCTTTCATGTAATCTTACAAGGATTCTAGAGTTCTGTACTCATGAGATTCCTCAAGCAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcctttccccttttctacatcttgggtgtaattattttaaaacatactgtgcagGTTTTGGAGTTTCAGCAACGGAAATGCAGTGTAATATTTGACCTCTCATGTAATCTTGCGAGGGTATTGGAGTTCTGTACCCGTGAGATACCTCAAGCAT
tgtaattattttaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtccggactagtccaggttttccccccttccttgccccatcctttttcctttccccttttctacatcttgggtgtaattattttaaaacatactgtgcagGTTTTGGAGTTTCAGCAACGGAAATGCAGTGTAATATTTGACCTCTCATGTAATCTTGCGAGGGTATTGGAGTTCTGTACCCGTGAGATACCTCAAGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - cccttcc
- - - - - - - - - - - - - - - -ttgcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaca