1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agaagcaaaaaatacttgtagtttcggttgtcggggaaagtacacagtccaactgatcattttgtatcatgaatttgatctcctttgctctgtcaaatagGTACTGCTAGATGATGAGGAGCTCTTTGTGGACAGGAGTTGGCGAGTAAAGTTTGAGAGGGTGCTAAACGATGGTTTCTCCCAGTTGCAAGGCCTCTGGG
species | Vitis vinifera |
transcript | Vv07s0031g00230.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGAGGACTGGTTATTGGGACTCATTTTTCTCAAGTTCTGGACTAGTCTG GTACTGCTAGATGATGAGGAGCTCTTTGTGGACAGGAGTTGGCGAGTAAAGEST: gi|110725160|gb|EE101552.1|EE101552
genomic: ATGAGGACTGGTTATTGGGACTCATTTTTCTCAAGTTCTGGACTAGTCTGgtgggttcgg ... tgtcaaatagGTACTGCTAGATGATGAGGAGCTCTTTGTGGACAGGAGTTGGCGAGTAAAG
EST: ATGAGGACTGGTTATTGGGACTCATTTTTCTCAAGTTCTGGACTAGTCTG GGACTGCTAGATGATGAGGAGCTCTTTGTGGGACAAGAGTTGGCGAATAAAEST: gi|110357312|gb|EC920764.1|EC920764
genomic: ATGAGGACTGGTTATTGGGACTCATTTTTCTCAAGTTCTGGACTAGTCTGgtgggttcgg ... tgtcaaatagGTACTGCTAGATGATGAGGAGCTCTTTGTGG-ACAGGAGTTGGCGAGTAAA
EST: ATGAGGACTGGTTATTGGGACTCATTTTTCTCAAGTTCTGGACTAGTCTG GTACTGCTAGATGATGAGGAGCTCTTTGTGGACAGGAGTTGGCGAGTAAAGEST: gi|71863118|gb|DT012173.1|DT012173
genomic: ATGAGGACTGGTTATTGGGACTCATTTTTCTCAAGTTCTGGACTAGTCTGgtgggttcgg ... tgtcaaatagGTACTGCTAGATGATGAGGAGCTCTTTGTGGACAGGAGTTGGCGAGTAAAG
EST: ATGAGGACTGGTTATTGGGACTCATTTTTCTCAAGTTCTGGACTAGTCTG GTACTGCTAGATGATGAGGAGCTCTTTGTGGACAGGAGTTGGCGAGTAAAGEST: gi|110719714|gb|EE095083.1|EE095083
genomic: ATGAGGACTGGTTATTGGGACTCATTTTTCTCAAGTTCTGGACTAGTCTGgtgggttcgg ... tgtcaaatagGTACTGCTAGATGATGAGGAGCTCTTTGTGGACAGGAGTTGGCGAGTAAAG
EST: ATGAAGACTGGTTATTGGGACTCATTTTTCTCAAGTTCTGGACTAGTCTG GTACTGCTAGATGATGAGGAGCTCTTTGTGGACAGGAGTTGGCGAAGTAA-
genomic: ATGAGGACTGGTTATTGGGACTCATTTTTCTCAAGTTCTGGACTAGTCTGgtgggttcgg ... tgtcaaatagGTACTGCTAGATGATGAGGAGCTCTTTGTGGACAGGAGTTGGCGA-GTAAA
agtccaactgatcattttgtatcatgaatttgatctcctttgctctgtcaaatagGTACTGCTAGATGATGAGGAGCTCTTTGTGGACAGGAGTTGGCGAGTAAAGTTTGAGAGGGTGCTAAACGATGGTTTCTCCCAGTTGCAAGGCCTCTGGG
tctcctttgctctgtc CT-rich tract
attttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaagcaaaaaatacttgtagtttcggttgtcggggaaagtacacagtccaactgatcattttgtatcatgaatttgatctcctttgctctgtcaaatagGTACTGCTAGATGATGAGGAGCTCTTTGTGGACAGGAGTTGGCGAGTAAAGTTTGAGAGGGTGCTAAACGATGGTTTCTCCCAGTTGCAAGGCCTCTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - aaaaaat
- - - - - - - - - - - - - - - -cggggaaa
- - - - - - - - - - - - - - - - - - - -gtacaca
- - - - - - - - - - - - - - - - - - - - - - - -tccaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaat