Sequence
atgc intronic sequence ATGC exonic sequencegtattgtatggtgtgtcctagtctaaattattggatttcattaaaagtaggttgcaaataaaagggattatctggttgcttcttccattttcagGTACACCCATGGTTTGAAGGTACTGAATGGGATAGACTATATCTTATGGAAGCTGCATTTATTCCCGAGGTCAGAGATGAATTAGATACTCAGAATTTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g03690.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA13G18670.2 (Glycine max), 3'ss of exon 8
gtattgtatggtgtgtcctagtctaaattattggatttcat-taaaagtaggttgcaaataaaagggattatctggttgcttcttccattttcagGTACACCCATGGTTTGAAGGTACTGAATGGGATAGACTATATCTTATGGAAGCTGCATTTATTCCCGAGGTCAGAGATGAATTAGATACTCAGAATTTTG
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gtgttgtatggtgtgtcattttctaaattcttagatttgttatattatttatttgggtgtggatt---ttacctttgtgctgcattcctctatagGCTCATCCATTCTTCAAAGGTGTTGAATGGGATAAGCTCTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACTCAGAATTTTG
upper sequence: Vv07s0005g03690.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA10G04410.3 (Glycine max), 3'ss of exon 9
gtattgtatggtgtgtcctagtctaaattattggatttcattaaaagtaggttgcaaataaaagggattatctggttgcttcttccattttcagGTACACCCATGGTTTGAAGGTACTGAATGGGATAGACTATATCTTATGGAAGCTGCATTTATTCCCGAGGTCAGAGATGAATTAGATACTCAGAATTTTG
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gtgttgtatggtgtgccattttctaaattcttagatttgtgatattatatatt-tgggtat--ggatttacctttgtgctgcattcttctttagGCTCATCCATTCTTCAAAGGTGTTGAATGGAATAAGTTGTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACTCAGAATTTTG
upper sequence: Vv07s0005g03690.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA03G32160.1 (Glycine max), 3'ss of exon 8
gtattgtatggtgtgtcctagtctaaattattggatttcattaaaagtaggttgcaaataaaagggattatctggttgcttcttccattttcagGTACACCCATGGTTTGAAGGTACTGAATGGGATAGACTATATCTTATGGAAGCTGCATTTATTCCCGAGGTCAGAGATGAATTAGATACTCAGAATTTTG
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gtgttgtctagtgtgtcattttctaaa--attatatatatata---------tggatatagaagttaccttttcattacattcctcatt---agGCTCATCCATTCTTCAACGGTGTTGAATGGGATAAATTGTATCAAATGGAAGCTGCCTTTATTCCTGAGGTCAATGATGAGTTAGATACTCAAAATTTTG
upper sequence: Vv07s0005g03690.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA19G34920.1 (Glycine max), 3'ss of exon 8
gtattgtatggtgtgtcctagtctaaattattggatttcattaaaagtaggttgcaaataaaagggattatctggttgcttcttccattttcagGTACACCCATGGTTTGAAGGTACTGAATGGGATAGACTATATCTTATGGAAGCTGCATTTATTCCCGAGGTCAGAGATGAATTAGATACTCAGAATTTTG
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gtgttgtatggtgtgtccttttctaaa------------agtatagatagatag-atatagaag---ttacctttccattctgttccttatcagGCTCATCAATTCTTTAATGGTGTGGAATGGGATAAATTGTATCAAATGGAAGCTGCCTTTATTCCTGAGGTCAATGATGAGTTAGATACTCAAAATTTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attaaaagtaggttgcaaataaaagggattatctggttgcttcttccattttcagGTACACCCATGGTTTGAAGGTACTGAATGGGATAGACTATATCTTATGGAAGCTGCATTTATTCCCGAGGTCAGAGATGAATTAGATACTCAGAATTTTG
ttgcttcttccatttt CT-rich tract
aaataaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattgtatggtgtgtcctagtctaaattattggatttcattaaaagtaggttgcaaataaaagggattatctggttgcttcttccattttcagGTACACCCATGGTTTGAAGGTACTGAATGGGATAGACTATATCTTATGGAAGCTGCATTTATTCCCGAGGTCAGAGATGAATTAGATACTCAGAATTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG