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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctctctatctgttcctatttatcatattctataaccatagattttattttggttctatttatcatcttttataaccgtagattttgtctaagataatttcttgattatgtattctttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT

Basic information

species Vitis vinifera
transcript Vv07s0005g02820.t01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22010916|gb|BQ795950.1|BQ795950
EST:     CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG                         ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: gi|34545710|gb|CF513942.1|CF513942
EST:     CCGTTAAGCTGATAGGTTGGGGAACCCCCGATGATGGGGAGGATTATTGG                         ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: gi|110716152|gb|EE090883.1|EE090883
EST:     CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG                         ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: gi|161711642|gb|FC061266.1|FC061266
EST:     CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG                         ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: gi|22012339|gb|BQ797373.1|BQ797373
EST:     CCGTTAAGCTGATAGGTTGGGGAACCCCCGATGATGGGGAGGATTATTGG                         ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: gi|110717706|gb|EE093795.1|EE093795
EST:     CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG                         ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: gi|30302325|gb|CB979119.1|CB979119
EST:     CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG                         ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: gi|110375663|gb|EC940672.1|EC940672
EST:     CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG                         ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: gi|352764436|gb|FQ472793.1|FQ472793
EST:     CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG                         ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: gi|26262146|gb|CA813209.1|CA813209
EST:     CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG                         ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: gi|110703469|gb|EE080340.1|EE080340
EST:     CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG                         ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: gi|110379925|gb|EC945151.1|EC945151
EST:     CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG                         ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: gi|110731310|gb|EE105611.1|EE105611
EST:     CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG                         ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: gi|351041020|gb|FQ443796.1|FQ443796
EST:     CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG                         ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: gi|110420331|gb|EC986603.1|EC986603
EST:     CCGTTAAGCTGATAGGTTGGGGAACCACTGATGATGGGGAGGATTATTGG                         ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: gi|110406529|gb|EC972106.1|EC972106
EST:     CCGTTAAGCTGATAGGTTGGGGAACCACTGATGATGGGGAGGATTATTGG                         ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: gi|110396856|gb|EC962558.1|EC962558
EST:     CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG                         ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: gi|110406274|gb|EC971841.1|EC971841
EST:     CCGTTAAGCTGATAGGTTGGGGAACCACTGATGATGGGGAGGATTATTGG                         ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: gi|351027477|gb|FQ444726.1|FQ444726
EST:     CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG                         ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: gi|110426643|gb|EC993059.1|EC993059
EST:     CCGTTAAGCTGATAGGTTGGGGAACCACTGATGATGGGGAGGATTATTGG                         ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: gi|110360706|gb|EC924023.1|EC924023
EST:     CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG                         ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
EST: gi|34545624|gb|CF513856.1|CF513856
EST:     CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGG                         ATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
genomic: CCGTTAAGCTGATAGGTTGGGGAACCACCGATGATGGGGAGGATTATTGGgtatctctct ... tttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataaccgtagattttgtctaagataatttcttgattatgtattctttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT
                                          ttctttgtt  CT-rich tract
                       ataatttcttgattat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatctctctatctgttcctatttatcatattctataaccatagattttattttggttctatttatcatcttttataaccgtagattttgtctaagataatttcttgattatgtattctttgttgcagATTCTTGCAAACCAGTGGAACAGAAACTGGGGCGAT

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